View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14245_high_31 (Length: 237)
Name: NF14245_high_31
Description: NF14245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14245_high_31 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 47726557 - 47726355
Alignment:
| Q |
17 |
ggtgcatgatggacctgtaaacaacaaatattccattgaaggacaattcattgatgaaatggacacaagtaacaagagtccattcaaggctactcatcct |
116 |
Q |
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| T |
47726557 |
ggtgcatgatggacctgtaaacaacaaatattccattgaaggacaattcattgatgaaatggacacaagtaacaagagtccattcaaggctactcatcct |
47726458 |
T |
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| Q |
117 |
gaactggcccatgttttctttcttcctttcagcgtttctaaggtcattcgctatgtttacaagcctagaaagtcaagatcagattataatcctcatcgct |
216 |
Q |
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| T |
47726457 |
gaactggcccatgttttctttcttcctttcagcgtgtctaaggtcattcgctatgtttacaagcctagaaagtcaagatcagattataatcctcatcgct |
47726358 |
T |
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| Q |
217 |
tac |
219 |
Q |
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||| |
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| T |
47726357 |
tac |
47726355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 47729130 - 47729070
Alignment:
| Q |
21 |
catgatggacctgtaaacaacaaatattccattgaaggacaattcattgatgaaatggaca |
81 |
Q |
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| T |
47729130 |
catgatggaccagtgaacaacatatatgcaattgaaggtcaattcattgatgaaatagaca |
47729070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 125 - 211
Target Start/End: Original strand, 26955568 - 26955654
Alignment:
| Q |
125 |
ccatgttttctttcttcctttcagcgtttctaaggtcattcgctatgtttacaagcctagaaagtcaagatcagattataatcctca |
211 |
Q |
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| T |
26955568 |
ccatgttttctttcttcgtttcagtgtgtctaaggtcattcgctatgtttacaaacctagaagatccagatcagattatgatcctca |
26955654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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