View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14245_high_6 (Length: 480)
Name: NF14245_high_6
Description: NF14245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14245_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 54395789 - 54395375
Alignment:
| Q |
1 |
caatgtatgtttcgtcattgatgcgaatgttatattcaacgtttttgctgttgataaattcgcttgtgtgaataacaagattactatcccgctcattacg |
100 |
Q |
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| T |
54395789 |
caatgtttgtttcgacattgatgcgaatggtatattgaacgtttctgctgaagataaaacagctggagtgaagaacaagataacgatcacgaatgataag |
54395690 |
T |
|
| Q |
101 |
gggaggttgatcagggaagcgtcagggaagatgagggtagatgccgcgatgtacaccgcagcggacgaagaggtgaagaagaaagtggaggcgaagaatt |
200 |
Q |
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| T |
54395689 |
gggaggttgagcaaggaagagatagagaagatggtgaaagatgcagagaagtataaggcagaggatgaagaggtgaagaagaaagtggaggcgaagaatt |
54395590 |
T |
|
| Q |
201 |
cacttgagaattatgcttataatatgaggaatacaataaaggatgagaagattggtgggaagttgagtcatgatgataaggagaagattgagaaggctgt |
300 |
Q |
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| T |
54395589 |
caattgagaattatgcttataatatgaggaatacaattaaggatgagaagattggtgggaagttgagtcatgaagataaggagaagattgagaaggctgt |
54395490 |
T |
|
| Q |
301 |
ggaagatgctatacagtggttggaggggaatcaaatggcggaagtggatgagtttgaggataagcagaaggagttggaaggaatttgtaatcctattatt |
400 |
Q |
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| T |
54395489 |
ggaagatgcaatacagtggttggaggggaatcaaatggcggaagtggatgagtttgaggataagcagaaggagttggaaggaatttgtaatcctattatt |
54395390 |
T |
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| Q |
401 |
gctaagatgtatcaa |
415 |
Q |
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| T |
54395389 |
gctaagatgtatcaa |
54395375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 291
Target Start/End: Original strand, 23588713 - 23588825
Alignment:
| Q |
179 |
aagaaagtggaggcgaagaattcacttgagaattatgcttataatatgaggaatacaataaaggatgagaagattggtgggaagttgagtcatgatgata |
278 |
Q |
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|||||||||||||| |||||| |||||||||| ||||| || || |||||||| ||||| || || || ||||||| | ||||||| | |||||||| |
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| T |
23588713 |
aagaaagtggaggccaagaatgcacttgagaactatgcctacaacatgaggaacacaatcaaagacgacaagattgcttcgaagttgtctgctgatgata |
23588812 |
T |
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| Q |
279 |
aggagaagattga |
291 |
Q |
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| T |
23588813 |
agaagaaaattga |
23588825 |
T |
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