View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14245_high_7 (Length: 469)

Name: NF14245_high_7
Description: NF14245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14245_high_7
NF14245_high_7
[»] chr1 (7 HSPs)
chr1 (11-233)||(33082502-33082723)
chr1 (161-218)||(23729467-23729524)
chr1 (171-217)||(23729966-23730012)
chr1 (172-233)||(43501194-43501255)
chr1 (260-329)||(15418264-15418334)
chr1 (223-267)||(36391367-36391411)
chr1 (223-267)||(49359631-49359675)
[»] chr8 (6 HSPs)
chr8 (260-453)||(37811206-37811399)
chr8 (146-232)||(13579123-13579208)
chr8 (137-233)||(13579717-13579812)
chr8 (169-233)||(10088659-10088724)
chr8 (234-267)||(36697685-36697718)
chr8 (235-267)||(9044190-9044222)
[»] chr4 (7 HSPs)
chr4 (302-402)||(42060347-42060446)
chr4 (93-233)||(33931912-33932047)
chr4 (261-333)||(42059577-42059649)
chr4 (223-267)||(49574756-49574800)
chr4 (150-219)||(33932648-33932717)
chr4 (235-267)||(43428480-43428512)
chr4 (235-276)||(56531817-56531858)
[»] chr3 (12 HSPs)
chr3 (146-233)||(46753247-46753334)
chr3 (146-218)||(22243109-22243181)
chr3 (146-233)||(46753932-46754019)
chr3 (171-218)||(53067749-53067796)
chr3 (146-218)||(22242908-22242980)
chr3 (257-333)||(16350-16426)
chr3 (223-267)||(29749347-29749391)
chr3 (223-267)||(47393885-47393929)
chr3 (223-269)||(20111913-20111959)
chr3 (223-269)||(54524698-54524744)
chr3 (146-219)||(29346380-29346453)
chr3 (171-218)||(53067219-53067267)
[»] chr2 (10 HSPs)
chr2 (93-233)||(23857108-23857249)
chr2 (150-233)||(23857837-23857920)
chr2 (146-233)||(15285649-15285734)
chr2 (146-233)||(22482868-22482954)
chr2 (146-235)||(22482184-22482271)
chr2 (223-267)||(30784868-30784912)
chr2 (223-265)||(6257781-6257823)
chr2 (223-267)||(25616842-25616886)
chr2 (146-233)||(1086775-1086864)
chr2 (223-261)||(37151906-37151944)
[»] chr7 (4 HSPs)
chr7 (88-211)||(22817180-22817303)
chr7 (146-218)||(45648934-45649006)
chr7 (235-267)||(19068469-19068501)
chr7 (223-267)||(43448531-43448575)
[»] scaffold0017 (1 HSPs)
scaffold0017 (172-218)||(31211-31257)
[»] chr6 (3 HSPs)
chr6 (172-233)||(1956871-1956932)
chr6 (223-269)||(12796040-12796086)
chr6 (223-267)||(32261212-32261256)
[»] chr5 (3 HSPs)
chr5 (182-233)||(13876145-13876196)
chr5 (235-267)||(14098500-14098532)
chr5 (223-266)||(26016226-26016269)
[»] scaffold1370 (1 HSPs)
scaffold1370 (235-269)||(206-240)


Alignment Details
Target: chr1 (Bit Score: 175; Significance: 5e-94; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 11 - 233
Target Start/End: Complemental strand, 33082723 - 33082502
Alignment:
Q  11 gagatgaagatggacaaagcaagagcggggaaggattgttttgagagaaagagaaagaaattgattggtgtgggttagaaatttactttaagagacatgc 110  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||    
T  33082723 gagaagaagatggacaaagcaagagcggg-aaggattgttttgagagaaagagaaagaaattgattggtgtgggttaaaaaattactttaagggacatgc 33082625  T
Q  111 atttaatgataattgaagaaagagagaggggtaaattttgtccaaaacaaataggtgcatgatgctaatgcacaccttctaaaattaaggtgggtgtgta 210  Q
    |||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  33082624 atttaacgataattgaagaaagagaaaggggtaaattttgtccaatacaaataggtgcatgatgctaatgcacaccttctaaaattaaggtggatgtgta 33082525  T
Q  211 ttagcattatccatatatatata 233  Q
    |||||||||  ||||||||||||    
T  33082524 ttagcattactcatatatatata 33082502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 23729524 - 23729467
Alignment:
Q  161 ataggtgcatgatgctaatgcacaccttctaaaattaaggtgggtgtgtattagcatt 218  Q
    ||||||| | ||||||||||||||||||||||||  ||||||||||||||||||||||    
T  23729524 ataggtgtaggatgctaatgcacaccttctaaaacaaaggtgggtgtgtattagcatt 23729467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 171 - 217
Target Start/End: Original strand, 23729966 - 23730012
Alignment:
Q  171 gatgctaatgcacaccttctaaaattaaggtgggtgtgtattagcat 217  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||    
T  23729966 gatgctaatgcacaccttctaaaataaaggtgggtgtgtattcgcat 23730012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 43501194 - 43501255
Alignment:
Q  172 atgctaatgcacaccttctaaaattaaggtgggtgtgtattagcattatccatatatatata 233  Q
    |||||||||||||||||||||  ||  |||||||||||||||||||||  ||||||||||||    
T  43501194 atgctaatgcacaccttctaatttttgggtgggtgtgtattagcattactcatatatatata 43501255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 329
Target Start/End: Original strand, 15418264 - 15418334
Alignment:
Q  260 atgagaggataaaataatggccaataaattaa-ttagatgccggtgattaaaagagaagttaaatgagtca 329  Q
    |||||||| | |||||||| ||| |||||||| ||||||  | |||||||||||||||||| |||||||||    
T  15418264 atgagagggtgaaataatgaccattaaattaacttagatcgctgtgattaaaagagaagtttaatgagtca 15418334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 267
Target Start/End: Complemental strand, 36391411 - 36391367
Alignment:
Q  223 atatatatataacattttaaatgagaggactttttaaatgagagg 267  Q
    |||||||||| | |||| ||||||||||||||| |||||||||||    
T  36391411 atatatatatgatatttcaaatgagaggactttataaatgagagg 36391367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 267
Target Start/End: Original strand, 49359631 - 49359675
Alignment:
Q  223 atatatatataacattttaaatgagaggactttttaaatgagagg 267  Q
    ||||||||| | ||||| ||||||||||| |||||||||||||||    
T  49359631 atatatatagagcatttcaaatgagaggagtttttaaatgagagg 49359675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 150; Significance: 4e-79; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 260 - 453
Target Start/End: Original strand, 37811206 - 37811399
Alignment:
Q  260 atgagaggataaaataatggccaataaattaattagatgccggtgattaaaagagaagttaaatgagtcatatgactctcttctctcccaaattcacttg 359  Q
    |||||||||||||||||||||||||  |||||||||||| |  ||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||    
T  37811206 atgagaggataaaataatggccaatggattaattagatgtctatgattaaaagagaagtttaatgagtcatatgactctcttcttacccaaattcacttg 37811305  T
Q  360 ctactcttttcttctaatgtgccttctcactctcctgacgtgcctacctatgccatcaaactcacggaggaaaaaggaaatgtagctggttggt 453  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  37811306 ctactcttttcttctaatgcgccttctcactctcctgacgtgcctacctatgccatcaaactcacagaggaaaaaggaaacgtagctggttggt 37811399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 146 - 232
Target Start/End: Complemental strand, 13579208 - 13579123
Alignment:
Q  146 ttttgtccaaaacaaataggtgcatgatgctaatgcacaccttctaaaattaaggtgggtgtgtattagcattatccatatatatat 232  Q
    ||||||||||| ||||| | || | ||||||||||||||||||||||||| || |||||||||||||||||||  ||||||||||||    
T  13579208 ttttgtccaaaccaaatggatgtaggatgctaatgcacaccttctaaaatcaaagtgggtgtgtattagcatt-cccatatatatat 13579123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 137 - 233
Target Start/End: Original strand, 13579717 - 13579812
Alignment:
Q  137 aggggtaaattttgtccaaaacaaataggtgcatgatgctaatgcacaccttctaaaattaaggtgggtgtgtattagcattatccatatatatata 233  Q
    |||||| | ||||||||||| ||||| |||| |  |||||||||||||||||||||||| || ||||||||| |||||||||  || ||||||||||    
T  13579717 aggggtcatttttgtccaaaccaaatgggtgtagaatgctaatgcacaccttctaaaatcaaagtgggtgtg-attagcattccccgtatatatata 13579812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 10088659 - 10088724
Alignment:
Q  169 atgatgctaatgcacaccttctaaaattaaggtgggtgtgtattagcattatcc-atatatatata 233  Q
    |||||||||||||||| ||||||||| | | ||||||||| |||| ||||| || |||||||||||    
T  10088659 atgatgctaatgcacatcttctaaaaatcaagtgggtgtgcattaacattaccctatatatatata 10088724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 267
Target Start/End: Original strand, 36697685 - 36697718
Alignment:
Q  234 acattttaaatgagaggactttttaaatgagagg 267  Q
    |||||| |||||||||||||||||||||||||||    
T  36697685 acatttcaaatgagaggactttttaaatgagagg 36697718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 235 - 267
Target Start/End: Original strand, 9044190 - 9044222
Alignment:
Q  235 cattttaaatgagaggactttttaaatgagagg 267  Q
    |||||||||||||| ||||||||||||||||||    
T  9044190 cattttaaatgagatgactttttaaatgagagg 9044222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 302 - 402
Target Start/End: Complemental strand, 42060446 - 42060347
Alignment:
Q  302 gtgattaaaagagaagttaaatgagtcatatgactctcttctctcccaaattcacttgctactcttttcttctaatgtgccttctcactctcctgacgtg 401  Q
    |||||||||||||||||| | |||||||||||| | ||||||| ||||||||||||| ||||||||||||| ||| | |||||||||||||||| |||||    
T  42060446 gtgattaaaagagaagttta-tgagtcatatgattttcttctcacccaaattcactttctactcttttcttttaacgcgccttctcactctcctcacgtg 42060348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 93 - 233
Target Start/End: Complemental strand, 33932047 - 33931912
Alignment:
Q  93 ttactttaagagacatgcatttaatgataattgaagaaagagagaggggtaaattttgtccaaaacaaataggtgcatgatgctaatgcacaccttctaa 192  Q
    |||||||||||  ||||| |||| ||| ||||||||||| ||     ||||  |||||| ||||  ||||||||| |  |||||||| ||||||||||||    
T  33932047 ttactttaagatgcatgcttttagtgacaattgaagaaaaag-----ggtactttttgttcaaagtaaataggtgtaacatgctaatacacaccttctaa 33931953  T
Q  193 aattaaggtgggtgtgtattagcattatccatatatatata 233  Q
    |||| | |||||||||||||||||||| |||| ||||||||    
T  33931952 aattcatgtgggtgtgtattagcattacccatgtatatata 33931912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 261 - 333
Target Start/End: Original strand, 42059577 - 42059649
Alignment:
Q  261 tgagaggataaaataatggccaataaattaattagatgccggtgattaaaagagaagttaaatgagtcatatg 333  Q
    ||||| ||||||||| ||||||||  ||||||||||||   |||||||||||||||||| |||||||||||||    
T  42059577 tgagatgataaaatagtggccaatggattaattagatgaatgtgattaaaagagaagtttaatgagtcatatg 42059649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 267
Target Start/End: Complemental strand, 49574800 - 49574756
Alignment:
Q  223 atatatatataacattttaaatgagaggactttttaaatgagagg 267  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||    
T  49574800 atatatatagaacatttcaaatgagaggactttttaaatgagagg 49574756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 150 - 219
Target Start/End: Original strand, 33932648 - 33932717
Alignment:
Q  150 gtccaaaacaaataggtgcatgatgctaatgcacaccttctaaaattaaggtgggtgtgtattagcatta 219  Q
    |||||||  ||| ||||| |||||||||||||||||||||||||||| |  |||||||  ||||||||||    
T  33932648 gtccaaagtaaaaaggtgtatgatgctaatgcacaccttctaaaattcaaatgggtgtacattagcatta 33932717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 267
Target Start/End: Original strand, 43428480 - 43428512
Alignment:
Q  235 cattttaaatgagaggactttttaaatgagagg 267  Q
    |||||||||||||||||||||||||||||||||    
T  43428480 cattttaaatgagaggactttttaaatgagagg 43428512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 276
Target Start/End: Original strand, 56531817 - 56531858
Alignment:
Q  235 cattttaaatgagaggactttttaaatgagaggataaaataa 276  Q
    ||||| |||| ||||||| |||||||||||||||||||||||    
T  56531817 catttcaaataagaggacattttaaatgagaggataaaataa 56531858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 146 - 233
Target Start/End: Complemental strand, 46753334 - 46753247
Alignment:
Q  146 ttttgtccaaaacaaataggtgcatgatgctaatgcacaccttctaaaattaaggtgggtgtgtattagcattatccatatatatata 233  Q
    ||||||| |||  ||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||    
T  46753334 ttttgtctaaattaaataggtgtaggatgctaatgcacaccttttaaaattaaggtgggtgtgtattagcatttcccatatatatata 46753247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 146 - 218
Target Start/End: Original strand, 22243109 - 22243181
Alignment:
Q  146 ttttgtccaaaacaaataggtgcatgatgctaatgcacaccttctaaaattaaggtgggtgtgtattagcatt 218  Q
    |||| |||||| ||| |||||| |||||||||||||||||||||||||||| | |||||||||||||||||||    
T  22243109 ttttatccaaatcaattaggtgtatgatgctaatgcacaccttctaaaattgaagtgggtgtgtattagcatt 22243181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 146 - 233
Target Start/End: Original strand, 46753932 - 46754019
Alignment:
Q  146 ttttgtccaaaacaaataggtgcatgatgctaatgcacaccttctaaaattaaggtgggtgtgtattagcattatccatatatatata 233  Q
    ||||||| |||  ||||||| | | ||||||||||||||| ||||||||||||||||||||||||||||||||  | |||||||||||    
T  46753932 ttttgtctaaattaaataggagtaggatgctaatgcacactttctaaaattaaggtgggtgtgtattagcattcccgatatatatata 46754019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 171 - 218
Target Start/End: Original strand, 53067749 - 53067796
Alignment:
Q  171 gatgctaatgcacaccttctaaaattaaggtgggtgtgtattagcatt 218  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  53067749 gatgctaatgcacaccttctaaaattatggtgggtgtgtattagcatt 53067796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 146 - 218
Target Start/End: Complemental strand, 22242980 - 22242908
Alignment:
Q  146 ttttgtccaaaacaaataggtgcatgatgctaatgcacaccttctaaaattaaggtgggtgtgtattagcatt 218  Q
    ||||||||||| ||| |||||| | |||||||||||||| ||||||||||| | |||||| ||||||||||||    
T  22242980 ttttgtccaaatcaattaggtgtaggatgctaatgcacatcttctaaaattgaagtgggtatgtattagcatt 22242908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 257 - 333
Target Start/End: Original strand, 16350 - 16426
Alignment:
Q  257 taaatgagaggataaaataatggccaataaattaattagatgccggtgattaaaagagaagttaaatgagtcatatg 333  Q
    ||||||||||||||||||| || ||| |  |||| ||||||| | |||||||||||||||||| ||||||| |||||    
T  16350 taaatgagaggataaaatactgaccattggattagttagatggctgtgattaaaagagaagtttaatgagtgatatg 16426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 267
Target Start/End: Complemental strand, 29749391 - 29749347
Alignment:
Q  223 atatatatataacattttaaatgagaggactttttaaatgagagg 267  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||    
T  29749391 atatatatatagcatttcaaatgagaggactttttaaatgagagg 29749347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 267
Target Start/End: Original strand, 47393885 - 47393929
Alignment:
Q  223 atatatatataacattttaaatgagaggactttttaaatgagagg 267  Q
    |||||||||| |||||| ||||||||||||||| |||||||||||    
T  47393885 atatatatatgacatttcaaatgagaggactttataaatgagagg 47393929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 269
Target Start/End: Complemental strand, 20111959 - 20111913
Alignment:
Q  223 atatatatataacattttaaatgagaggactttttaaatgagaggat 269  Q
    |||||||||| |||||| |||| ||||||||||| ||||||||||||    
T  20111959 atatatatatgacatttcaaataagaggacttttaaaatgagaggat 20111913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 269
Target Start/End: Complemental strand, 54524744 - 54524698
Alignment:
Q  223 atatatatataacattttaaatgagaggactttttaaatgagaggat 269  Q
    |||||||||  |||||| |||||||||||||||| ||||||||||||    
T  54524744 atatatataggacatttcaaatgagaggacttttaaaatgagaggat 54524698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 219
Target Start/End: Original strand, 29346380 - 29346453
Alignment:
Q  146 ttttgtccaaaacaaataggtgcatgatgctaatgcacaccttctaaaattaaggtgggtgtgtattagcatta 219  Q
    |||||||||||   || ||||| |||||| ||||||||||||||||||||  | |||| |||| ||||||||||    
T  29346380 ttttgtccaaagtgaaaaggtgtatgatgttaatgcacaccttctaaaatccaagtggatgtgcattagcatta 29346453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 171 - 218
Target Start/End: Complemental strand, 53067267 - 53067219
Alignment:
Q  171 gatgctaatgcacaccttctaaaa-ttaaggtgggtgtgtattagcatt 218  Q
    |||||||||||||||| ||||||| ||| ||||||||||| ||||||||    
T  53067267 gatgctaatgcacaccatctaaaaattatggtgggtgtgtgttagcatt 53067219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 93 - 233
Target Start/End: Complemental strand, 23857249 - 23857108
Alignment:
Q  93 ttactttaagagacat--gcatttaatgataattgaagaaagagagaggggtaaattttgtccaaaacaaataggtgcatgatgctaatgcacaccttct 190  Q
    ||||||||||||||||  || |||||||| ||||||||||||||| |||| ||  ||  |||||||  ||| ||||| |||||||||||||||||||| |    
T  23857249 ttactttaagagacatatgcttttaatgacaattgaagaaagagaaaggg-tactttaagtccaaagtaaaaaggtgtatgatgctaatgcacacctttt 23857151  T
Q  191 aaaattaaggtgggtgtgtattagcattatccatatatatata 233  Q
    |||||| | || |||||| |||||||||| |||||||||||||    
T  23857150 aaaattcaagtaggtgtgcattagcattacccatatatatata 23857108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 150 - 233
Target Start/End: Original strand, 23857837 - 23857920
Alignment:
Q  150 gtccaaaacaaataggtgcatgatgctaatgcacaccttctaaaattaaggtgggtgtgtattagcattatccatatatatata 233  Q
    |||||||  ||| ||||| |||||||||||||||||||||||||||| | ||||||||| |||||||||| |||||||||||||    
T  23857837 gtccaaagtaaaaaggtgtatgatgctaatgcacaccttctaaaattcaagtgggtgtgcattagcattacccatatatatata 23857920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 146 - 233
Target Start/End: Original strand, 15285649 - 15285734
Alignment:
Q  146 ttttgtccaaaacaaataggtgcatgatgctaatgcacaccttctaaaattaaggtgggtgtgtattagcattatccatatatatata 233  Q
    ||||||||||| ||| |||||| | ||||||||||||||| |||||||||| | ||||||||||||||||||  ||||||||||||||    
T  15285649 ttttgtccaaatcaattaggtgtaggatgctaatgcacacattctaaaattgaagtgggtgtgtattagcat--tccatatatatata 15285734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 146 - 233
Target Start/End: Original strand, 22482868 - 22482954
Alignment:
Q  146 ttttgtccaaaacaaataggtgcatgatgctaatgcacaccttctaaaattaaggtgggtgtgtattagcattatccatatatatata 233  Q
    ||||||| |||  ||||||| | | |||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||    
T  22482868 ttttgtctaaattaaataggagtaggatgctaatgcacaccttctaaaattaatgtgggtgtgtattagcatt-cccatatatatata 22482954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 146 - 235
Target Start/End: Complemental strand, 22482271 - 22482184
Alignment:
Q  146 ttttgtccaaaacaaataggtgcatgatgctaatgcacaccttctaaaattaaggtgggtgtgtattagcattatccatatatatataac 235  Q
    ||||||| |||  ||||||||| | ||||||||||||||||||||||||||||| |||||||||||| ||||  ||| ||||||||||||    
T  22482271 ttttgtctaaattaaataggtgtaggatgctaatgcacaccttctaaaattaagatgggtgtgtattggcat--tccctatatatataac 22482184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 267
Target Start/End: Original strand, 30784868 - 30784912
Alignment:
Q  223 atatatatataacattttaaatgagaggactttttaaatgagagg 267  Q
    |||||||||| |||||| |||||||||||||||||||||||||||    
T  30784868 atatatatatgacatttcaaatgagaggactttttaaatgagagg 30784912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 265
Target Start/End: Complemental strand, 6257823 - 6257781
Alignment:
Q  223 atatatatataacattttaaatgagaggactttttaaatgaga 265  Q
    |||||||||| |||||| |||||||||||||||||||||||||    
T  6257823 atatatatatgacatttcaaatgagaggactttttaaatgaga 6257781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 267
Target Start/End: Original strand, 25616842 - 25616886
Alignment:
Q  223 atatatatataacattttaaatgagaggactttttaaatgagagg 267  Q
    ||||||||||  ||||| |||||||||||||||||||||||||||    
T  25616842 atatatatatggcatttcaaatgagaggactttttaaatgagagg 25616886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 233
Target Start/End: Complemental strand, 1086864 - 1086775
Alignment:
Q  146 ttttgtccaaaacaaataggtgcatgatgctaatgcacaccttc--taaaattaaggtgggtgtgtattagcattatccatatatatata 233  Q
    |||||| ||||||||| |||||  || |||||||||||||||||   ||||  |||||||||||||  ||| |||| |||||||||||||    
T  1086864 ttttgttcaaaacaaaaaggtgtttgttgctaatgcacaccttcataaaaaaaaaggtgggtgtgttatagtattacccatatatatata 1086775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 261
Target Start/End: Original strand, 37151906 - 37151944
Alignment:
Q  223 atatatatataacattttaaatgagaggactttttaaat 261  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  37151906 atatatatatgacatttcaaatgagaggactttttaaat 37151944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 88 - 211
Target Start/End: Original strand, 22817180 - 22817303
Alignment:
Q  88 gaaatttactttaagagacatgcatttaatgataattgaagaaagagaga-ggggtaaattttgtccaaaacaaataggtgcatgatgctaatgcacacc 186  Q
    |||| |||||||||  ||||||  |||||||| |||| || ||||||||| ||||||  ||||||||||| |||||||||| ||||||| ||||||||||    
T  22817180 gaaaattactttaaaggacatgtgtttaatgacaattaaa-aaagagagaaggggtattttttgtccaaatcaaataggtgtatgatgccaatgcacacc 22817278  T
Q  187 ttctaaaattaaggtgggtgtgtat 211  Q
    |||||||||||| ||||||| ||||    
T  22817279 ttctaaaattaaagtgggtgcgtat 22817303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 146 - 218
Target Start/End: Complemental strand, 45649006 - 45648934
Alignment:
Q  146 ttttgtccaaaacaaataggtgcatgatgctaatgcacaccttctaaaattaaggtgggtgtgtattagcatt 218  Q
    ||||||||||| ||| |||||| | ||||||| | |||||||||||||||| | |||||||||||||||||||    
T  45649006 ttttgtccaaatcaattaggtgtaggatgctactacacaccttctaaaattgaagtgggtgtgtattagcatt 45648934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 235 - 267
Target Start/End: Original strand, 19068469 - 19068501
Alignment:
Q  235 cattttaaatgagaggactttttaaatgagagg 267  Q
    ||||| |||||||||||||||||||||||||||    
T  19068469 catttcaaatgagaggactttttaaatgagagg 19068501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 267
Target Start/End: Complemental strand, 43448575 - 43448531
Alignment:
Q  223 atatatatataacattttaaatgagaggactttttaaatgagagg 267  Q
    |||||||||  |||||| |||||||||||| ||||||||||||||    
T  43448575 atatatataggacatttcaaatgagaggaccttttaaatgagagg 43448531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 172 - 218
Target Start/End: Original strand, 31211 - 31257
Alignment:
Q  172 atgctaatgcacaccttctaaaattaaggtgggtgtgtattagcatt 218  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  31211 atgctaatgcacaccttctaaaattatggtgggtgtgtattagcatt 31257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 1956932 - 1956871
Alignment:
Q  172 atgctaatgcacaccttctaaaattaaggtgggtgtgtattagcattatccatatatatata 233  Q
    |||||||| |||||||||||||||| | |||||||||||||||||||  |||||||||||||    
T  1956932 atgctaatacacaccttctaaaattgaagtgggtgtgtattagcattccccatatatatata 1956871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 269
Target Start/End: Complemental strand, 12796086 - 12796040
Alignment:
Q  223 atatatatataacattttaaatgagaggactttttaaatgagaggat 269  Q
    ||||||| || |||||||||||| ||| |||||||||||||||||||    
T  12796086 atatatagatgacattttaaatgggagaactttttaaatgagaggat 12796040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 267
Target Start/End: Complemental strand, 32261256 - 32261212
Alignment:
Q  223 atatatatataacattttaaatgagaggactttttaaatgagagg 267  Q
    ||||||||||  ||||| |||||||| ||||||||||||||||||    
T  32261256 atatatatatggcatttcaaatgagatgactttttaaatgagagg 32261212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 182 - 233
Target Start/End: Original strand, 13876145 - 13876196
Alignment:
Q  182 acaccttctaaaattaaggtgggtgtgtattagcattatccatatatatata 233  Q
    ||||||||||||||| | ||||||||| |||| |||||||||||||||||||    
T  13876145 acaccttctaaaattcaagtgggtgtgcattaccattatccatatatatata 13876196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 267
Target Start/End: Original strand, 14098500 - 14098532
Alignment:
Q  235 cattttaaatgagaggactttttaaatgagagg 267  Q
    |||||||||||||||||||||||||||||||||    
T  14098500 cattttaaatgagaggactttttaaatgagagg 14098532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 266
Target Start/End: Complemental strand, 26016269 - 26016226
Alignment:
Q  223 atatatatataacattttaaatgagaggactttttaaatgagag 266  Q
    ||||||||||  ||||| ||||||||||||||||||||||||||    
T  26016269 atatatatatggcatttcaaatgagaggactttttaaatgagag 26016226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1370 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1370
Description:

Target: scaffold1370; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 269
Target Start/End: Original strand, 206 - 240
Alignment:
Q  235 cattttaaatgagaggactttttaaatgagaggat 269  Q
    ||||| |||||||||||||||||||||||||||||    
T  206 catttcaaatgagaggactttttaaatgagaggat 240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University