View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14245_high_8 (Length: 465)
Name: NF14245_high_8
Description: NF14245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14245_high_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 18 - 428
Target Start/End: Complemental strand, 4538261 - 4537851
Alignment:
| Q |
18 |
ctacatttggaagaacagatattacaaatgaattttttgatagagttcgtggaggtcaaaaatgcctgtataacaatagaaactctacgctttgttctct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4538261 |
ctacatttggaagaacagatattacaaatgaattttttgatagagttcgtggaggtcaaaaatgcctgtataacaatagaaactctacgctttgttctct |
4538162 |
T |
|
| Q |
118 |
ttttgcaagaaaatttgctccaagtgctttggaacctttgttagatatggtgaattcaaaagtcttagacttctgatatatttatattttctattgttta |
217 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
4538161 |
ttttgcaagaaaatttgctcctagtgctttggaacctttgttagatatggtgaattcaaaagtcttagacttctgatatatttatattttctattgatta |
4538062 |
T |
|
| Q |
218 |
ctgcatatgaaaatataattgtagaacaaaagtctttagaaaaactagaaattttattatatggcatggcatggtgattgcctcattggatggtgaatgc |
317 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4538061 |
ctgcatatgaaaatataaatgtagaacaaaagtctttagaaaaactagaaattttattatatggcatggcatggtgattgcctcattggatggtgaatgc |
4537962 |
T |
|
| Q |
318 |
tagatgatggtagtgatgacctcaattttcacaacttttgagtcatttttgaatgtacagatgagcttattggatcatacatttgtttcatattaatcgt |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
4537961 |
tagatgatggtagtgatgacctcaattttcacaacttttgagtcatttttgaatgtacagatgagcttattggatcatacatttgtttcatattaattgt |
4537862 |
T |
|
| Q |
418 |
ttggatcttta |
428 |
Q |
| |
|
||||||||||| |
|
|
| T |
4537861 |
ttggatcttta |
4537851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University