View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14245_low_10 (Length: 435)
Name: NF14245_low_10
Description: NF14245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14245_low_10 |
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| [»] scaffold0989 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 14 - 174
Target Start/End: Complemental strand, 28681430 - 28681270
Alignment:
| Q |
14 |
gaaaatcagcatttgttctaatgtaatgccttcagnnnnnnngtctgattgtagaagaattgtcctcgtgctcgtgcccaaagagatgtaaactttcatt |
113 |
Q |
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| T |
28681430 |
gaaaatcagcatttgttctaatgtaatgccttcagaaaaaa-gtctgattgtagaagaattgtcctcgtgctcgtgcccaaagagatgtaaactttcatt |
28681332 |
T |
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| Q |
114 |
tggacataagcattgttactagaattatcagtgttgttctaacatgaaacc-atttagtttg |
174 |
Q |
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| T |
28681331 |
tgaacataagtattgttactagaattatcagtgttgttctaacatgaaaccaatttagtttg |
28681270 |
T |
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Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 270 - 356
Target Start/End: Complemental strand, 7895973 - 7895886
Alignment:
| Q |
270 |
tgtttgtatgcttttaa-tttattttgctatattgcattgaaattgagaattgttgcaaatcctatttgttgtcagaattgtttgatt |
356 |
Q |
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| T |
7895973 |
tgtttggatgcttttaaatttattttgctttattgcattgaaagtgagaattgttacaagtcctatttgttgtcagtgttgtttgatt |
7895886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 299 - 412
Target Start/End: Original strand, 7793599 - 7793712
Alignment:
| Q |
299 |
tattgcattgaaattgagaattgttgcaaatcctatttgttgtcagaattgtttgattgcacgtgtttctggaatatgttggctttactaaggaacttat |
398 |
Q |
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| T |
7793599 |
tattgcattgaaagtgagaattgttttaagttctatttgttgtctgagttgtttgattgtgtttgttactggaatatgatagcattactaaggagcttgt |
7793698 |
T |
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| Q |
399 |
gatattccaattgt |
412 |
Q |
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| T |
7793699 |
gagattctaattgt |
7793712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 323
Target Start/End: Complemental strand, 14435366 - 14435308
Alignment:
| Q |
266 |
attctgtttgtatgcttttaattt-attttgctatattgcattgaaattgagaattgtt |
323 |
Q |
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| T |
14435366 |
attctgtttggatgctttaaattttattttgctctattgcattgaaagtgagaattgtt |
14435308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 7818043 - 7818002
Alignment:
| Q |
161 |
aaccatttagtttgatactttggacaatatatacatgcttgg |
202 |
Q |
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| T |
7818043 |
aaccatttagtttgatagtttggacaaaatatatatgcttgg |
7818002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0989 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0989
Description:
Target: scaffold0989; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 323
Target Start/End: Original strand, 101 - 159
Alignment:
| Q |
266 |
attctgtttgtatgcttttaattt-attttgctatattgcattgaaattgagaattgtt |
323 |
Q |
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| T |
101 |
attctgtttggatgctttaaattttattttgctctattgcattgaaagtgagaattgtt |
159 |
T |
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