View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14245_low_11 (Length: 422)

Name: NF14245_low_11
Description: NF14245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14245_low_11
NF14245_low_11
[»] chr8 (1 HSPs)
chr8 (3-406)||(41332857-41333260)
[»] chr6 (3 HSPs)
chr6 (34-95)||(31397803-31397864)
chr6 (33-95)||(31382518-31382580)
chr6 (3-95)||(31385804-31385896)
[»] chr1 (7 HSPs)
chr1 (33-95)||(30365283-30365345)
chr1 (263-358)||(45083558-45083653)
chr1 (263-358)||(45079267-45079362)
chr1 (40-87)||(45068318-45068365)
chr1 (263-358)||(45076143-45076238)
chr1 (42-89)||(45083375-45083422)
chr1 (42-87)||(45075945-45075990)
[»] chr7 (1 HSPs)
chr7 (263-358)||(34505939-34506034)


Alignment Details
Target: chr8 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 3 - 406
Target Start/End: Complemental strand, 41333260 - 41332857
Alignment:
Q  3 agactaattaagtgggttccaaatattacctgttatgacaacatcagtgaggttggttccaaaaattagactgctataccttccaccctgagtgtccctc 102  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41333260 agactaattaaatgggttccaaatattacctgttatgacaacatcagtgaggttggttccaaaaattagactgctataccttccaccctgagtgtccctc 41333161  T
Q  103 cctctaccataagacggcaagggatcaatcaccggccattcactttcatcctaacaaaacacaaacatagtattgaaatactttaattacatatggtgaa 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41333160 cctctaccataagacggcaagggatcaatcaccggccattcactttcatcctaacaaaacacaaacatagtattgaaatactttaattacatatggtgaa 41333061  T
Q  203 gagttacgttacattttcatattcatattgacaggaaaaagttagttaagctattatcaaacctgagaaccaagaatgacagcatctttgtgtaggaata 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41333060 gagttacgttacattttcatattcatattgacaggaaaaagttagttaagctattatcaaacctgagaaccaagaatgacagcatctttgtgtaggaata 41332961  T
Q  303 aagtgaaatgactggtgagattgaagctaccagtcaaccatcttcctggtggaacatatagttgagaaccaccatttgatgagtactgactcaaatgatc 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41332960 aagtgaaatgactggtgagattgaagctaccagtcaaccatcttcctggtggaacatatagttgagaaccaccatttgatgagtactgactcaaatgatc 41332861  T
Q  403 tatg 406  Q
    ||||    
T  41332860 tatg 41332857  T

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Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 31397803 - 31397864
Alignment:
Q  34 gttatgacaacatcagtgaggttggttccaaaaattagactgctataccttccaccctgagt 95  Q
    |||||||| |||||||| |||||||||||||||||||||||||| ||||| |||||||||||    
T  31397803 gttatgactacatcagtcaggttggttccaaaaattagactgctctacctgccaccctgagt 31397864  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 33 - 95
Target Start/End: Original strand, 31382518 - 31382580
Alignment:
Q  33 tgttatgacaacatcagtgaggttggttccaaaaattagactgctataccttccaccctgagt 95  Q
    ||||||| | |||||||||||||||||| ||||||||||||||||||| |||||||| |||||    
T  31382518 tgttatggctacatcagtgaggttggttacaaaaattagactgctataacttccaccttgagt 31382580  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 95
Target Start/End: Original strand, 31385804 - 31385896
Alignment:
Q  3 agactaattaagtgggttccaaatattacctgttatgacaacatcagtgaggttggttccaaaaattagactgctataccttccaccctgagt 95  Q
    ||||||||||| | |||| |||||  || |||||||||  ||||||| ||||||||||| |||||||| || |||||||||| |||| |||||    
T  31385804 agactaattaaattggtttcaaattgtatctgttatgattacatcagcgaggttggttctaaaaattacacagctatacctttcaccttgagt 31385896  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 33 - 95
Target Start/End: Original strand, 30365283 - 30365345
Alignment:
Q  33 tgttatgacaacatcagtgaggttggttccaaaaattagactgctataccttccaccctgagt 95  Q
    ||||||||| ||||||||||||||||||| |||||| | |||||||||||||||||| |||||    
T  30365283 tgttatgactacatcagtgaggttggttcaaaaaatgaaactgctataccttccaccttgagt 30365345  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 263 - 358
Target Start/End: Original strand, 45083558 - 45083653
Alignment:
Q  263 acctgagaaccaagaatgacagcatctttgtgtaggaataaagtgaaatgactggtgagattgaagctaccagtcaaccatcttcctggtggaaca 358  Q
    ||||||||  ||||||||||||||||||| || || || | ||||||||| || |||||||||||||| ||||| | |||| | ||||||||||||    
T  45083558 acctgagatgcaagaatgacagcatctttttggagaaaaagagtgaaatggcttgtgagattgaagcttccagttagccatttacctggtggaaca 45083653  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 358
Target Start/End: Original strand, 45079267 - 45079362
Alignment:
Q  263 acctgagaaccaagaatgacagcatctttgtgtaggaataaagtgaaatgactggtgagattgaagctaccagtcaaccatcttcctggtggaaca 358  Q
    |||||||| |||||||| ||||||||||| || || || | ||||||||| || |||||||||||||| || || | |||| | ||||||||||||    
T  45079267 acctgagatccaagaataacagcatctttttggagaaaaagagtgaaatggcttgtgagattgaagcttccggttagccatttacctggtggaaca 45079362  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 40 - 87
Target Start/End: Original strand, 45068318 - 45068365
Alignment:
Q  40 acaacatcagtgaggttggttccaaaaattagactgctataccttcca 87  Q
    ||||||||||||||||| ||||||||||| ||||| ||| ||||||||    
T  45068318 acaacatcagtgaggttagttccaaaaatgagactactaaaccttcca 45068365  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 263 - 358
Target Start/End: Original strand, 45076143 - 45076238
Alignment:
Q  263 acctgagaaccaagaatgacagcatctttgtgtaggaataaagtgaaatgactggtgagattgaagctaccagtcaaccatcttcctggtggaaca 358  Q
    ||||||||  |||||||||||| |||||| || || || | ||||||||| || |||||||||||||| || || | |||| | ||||||||||||    
T  45076143 acctgagatgcaagaatgacagaatctttttggagaaaaagagtgaaatggcttgtgagattgaagcttccggttagccatttacctggtggaaca 45076238  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 42 - 89
Target Start/End: Original strand, 45083375 - 45083422
Alignment:
Q  42 aacatcagtgaggttggttccaaaaattagactgctataccttccacc 89  Q
    ||||||| ||||||| ||||||||||| ||||||||| ||||||||||    
T  45083375 aacatcaatgaggttagttccaaaaatgagactgctaaaccttccacc 45083422  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 45075945 - 45075990
Alignment:
Q  42 aacatcagtgaggttggttccaaaaattagactgctataccttcca 87  Q
    ||||||||||||||| ||||||||||  ||||||||| ||||||||    
T  45075945 aacatcagtgaggttagttccaaaaacgagactgctaaaccttcca 45075990  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 358
Target Start/End: Original strand, 34505939 - 34506034
Alignment:
Q  263 acctgagaaccaagaatgacagcatctttgtgtaggaataaagtgaaatgactggtgagattgaagctaccagtcaaccatcttcctggtggaaca 358  Q
    |||||||| ||||||||||| ||  |||| || || || | ||||||||| || |||||||||||||| ||||| |||||| | ||||||||||||    
T  34505939 acctgagatccaagaatgaccgcgcctttttggagaaaaagagtgaaatggcttgtgagattgaagcttccagttaaccatttacctggtggaaca 34506034  T

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