View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14245_low_14 (Length: 387)

Name: NF14245_low_14
Description: NF14245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14245_low_14
NF14245_low_14
[»] chr7 (5 HSPs)
chr7 (1-370)||(46629870-46630239)
chr7 (23-370)||(46637689-46638039)
chr7 (7-370)||(46618983-46619349)
chr7 (17-370)||(46176142-46176490)
chr7 (6-370)||(46642753-46643114)
[»] chr3 (1 HSPs)
chr3 (1-369)||(18375845-18376213)
[»] chr1 (1 HSPs)
chr1 (1-371)||(15769166-15769530)


Alignment Details
Target: chr7 (Bit Score: 366; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 46630239 - 46629870
Alignment:
Q  1 ctcaatgaattaataggcacgtatttcaattcccttagatcagatggctttccgtcatgcaccaaactagcatcagtaaccatgaatttgatgtgatctt 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46630239 ctcaatgaattaataggcacatatttcaattcccttagatcagatggctttccgtcatgcaccaaactagcatcagtaaccatgaatttgatgtgatctt 46630140  T
Q  101 tactgtaagaagaagatcgaggcttgaggtaacattggcgatgatcgtcagataaatcatgtccatttgatctcttttctagctcttcctcattgcagct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46630139 tactgtaagaagaagatcgaggcttgaggtaacattggcgatgatcgtcagataaatcatgtccatttgatctcttttctagctcttcctcattgcagct 46630040  T
Q  201 accgactttagcagcttcttcttctttaaggacgagaatattcggttcagctactacttttttcaagacatcgctaactgaatcaaagtaatggttacct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46630039 accgactttagcagcttcttcttctttaaggacgagaatattcggttcagctactacttttttcaagacatcgctaactgaatcaaagtaatggttacct 46629940  T
Q  301 ttcactagttttctccttgaaaacttctgaacaccaggaataagaaaaaccagataatcatcggaggtaa 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46629939 ttcactagttttctccttgaaaacttctgaacaccaggaataagaaaaaccagataatcatcggaggtaa 46629870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 23 - 370
Target Start/End: Complemental strand, 46638039 - 46637689
Alignment:
Q  23 atttcaattcccttagatcagatggctttccgtcatgcaccaaactagcatcagtaaccatgaatttgatgtgatctttactgtaagaagaagatcgagg 122  Q
    ||||||||||||||| | |||||| ||||||  ||||||||||||| | |||| |||||| ||||||||| |||||||||||||||| |||||| || ||    
T  46638039 atttcaattcccttaaagcagatgactttccaccatgcaccaaactggtatcaataaccaagaatttgatatgatctttactgtaagtagaagaccgggg 46637940  T
Q  123 cttgaggtaacattggcgatgatcgtcagataaatcatgtccatttgatctcttttctagctcttcctcattgcagctaccgactttagcagcttcttct 222  Q
    ||||||||||||||| |||||||||||||| ||||||| | |||||||||  |||||| |||||||||||||||||||||| ||||| ||  ||||||||    
T  46637939 cttgaggtaacattgacgatgatcgtcagacaaatcatcttcatttgatccattttctggctcttcctcattgcagctaccaactttggcttcttcttct 46637840  T
Q  223 tctt---taaggacgagaatattcggttcagctactacttttttcaagacatcgctaactgaatcaaagtaatggttacctttcactagttttctccttg 319  Q
    ||||   | || | |||||||||||||||||| ||||||||| |||||||||| ||||| |||||||||||||||| ||||||||| |||||||||||||    
T  46637839 tcttctttgagcaggagaatattcggttcagcaactacttttctcaagacatcactaacagaatcaaagtaatggtcacctttcacaagttttctccttg 46637740  T
Q  320 aaaacttctgaacaccaggaataagaaaaaccagataatcatcggaggtaa 370  Q
    ||||||||| |||||||||||||||||||||||||| ||||| ||||||||    
T  46637739 aaaacttctcaacaccaggaataagaaaaaccagattatcattggaggtaa 46637689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 7 - 370
Target Start/End: Complemental strand, 46619349 - 46618983
Alignment:
Q  7 gaattaataggcacgtatttcaattcccttagatcagatggctttccgtcatgcaccaaactagcatcagtaaccatgaatttgatgtgatctttactgt 106  Q
    ||||||| ||||||  ||||||||||||||| | |||||| ||||||  ||||||||||||| | |||| |||||||||||||||| |||||||||||||    
T  46619349 gaattaacaggcacagatttcaattcccttaaagcagatgactttccaccatgcaccaaactggtatcaataaccatgaatttgatatgatctttactgt 46619250  T
Q  107 aagaagaagatcgaggcttgaggtaacattggcgatgatcgtcagataaatcatgtccatttgatctcttttctagctcttcctcattgcagctaccgac 206  Q
    ||| ||||||||| |||||||||||||| | ||||||||| | ||| | ||||| | |||||||||  |||||  | |||||||||||||||||||| |     
T  46619249 aagtagaagatcggggcttgaggtaacaatagcgatgatccttagacagatcatcttcatttgatccattttcgggatcttcctcattgcagctaccaaa 46619150  T
Q  207 tttag---cagcttcttcttctttaaggacgagaatattcggttcagctactacttttttcaagacatcgctaactgaatcaaagtaatggttacctttc 303  Q
    ||| |   |  ||||||||||||| || |||||||||||||||||||| ||||||||| |||||||||| ||||| |||||||||||||||| |||||||    
T  46619149 tttggcttctccttcttcttctttgagcacgagaatattcggttcagcaactacttttctcaagacatcactaacagaatcaaagtaatggtcacctttc 46619050  T
Q  304 actagttttctccttgaaaacttctgaacaccaggaataagaaaaaccagataatcatcggaggtaa 370  Q
    || ||||||||||| |||||||||| |||||| ||||||||||||||||||||||||| ||| ||||    
T  46619049 acaagttttctcctcgaaaacttctcaacaccgggaataagaaaaaccagataatcattggaagtaa 46618983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 17 - 370
Target Start/End: Original strand, 46176142 - 46176490
Alignment:
Q  17 gcacgtatttcaattcccttagatcagatggctttccgtcatgcaccaaactagcatcagtaaccatgaatttgatgtgatctttactgtaaga-agaag 115  Q
    |||| ||||||||| ||||||||||||||||||||||| ||||||||||||| | |||| ||||||||||||| || ||||||||| |||| |  || ||    
T  46176142 gcacatatttcaatacccttagatcagatggctttccgccatgcaccaaactggtatcaataaccatgaattttatatgatctttattgtaggttagcag 46176241  T
Q  116 atcgaggcttgaggtaacattggcgatgatcgtcagataaatcatgtccatttgatctcttttctagctcttcctcattgcagctaccgactttagcagc 215  Q
    ||   ||||||||||||||||| |||||||||||||||||||||| | ||||||||| ||||||| | |||||||||||| ||||||| ||||||||       
T  46176242 atttgggcttgaggtaacattgacgatgatcgtcagataaatcatcttcatttgatcccttttctggttcttcctcattgtagctaccaactttagc--- 46176338  T
Q  216 ttcttcttctttaaggacgagaatattcggttcagctactacttttttcaagacatcgctaactgaatcaaagtaatggttacctttcactagttttctc 315  Q
       ||||||||  || ||||||||||| |||||||||||||||||  |||||||||| |||||  ||||||||||||| | ||||||||| |||||||||    
T  46176339 ---ttcttcttcgagcacgagaatattaggttcagctactactttgctcaagacatcactaacataatcaaagtaatgatcacctttcacaagttttctc 46176435  T
Q  316 cttgaaaacttctgaacaccaggaataagaaaaaccagataatcatcggaggtaa 370  Q
    ||||||||||||| |||||||||||| |||||||||| |||||| | ||||||||    
T  46176436 cttgaaaacttctcaacaccaggaatgagaaaaaccaaataatcttgggaggtaa 46176490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 6 - 370
Target Start/End: Original strand, 46642753 - 46643114
Alignment:
Q  6 tgaattaataggcacgtatttcaattcccttagatcagatggctttccgtcatgcaccaaactagcatcagtaaccatgaatttgatgtgatctttactg 105  Q
    |||||||| ||||||  ||||||| ||||| | ||||||||||||||| | |||||||||||| | |||| || |||| ||||| || ||||||||| ||    
T  46642753 tgaattaacaggcacaaatttcaaatccctgaaatcagatggctttcctttatgcaccaaactggtatcaatacccattaattttatatgatctttattg 46642852  T
Q  106 taagaagaagatcgaggcttgaggtaacattggcgatgatcgtcagataaatcatgtccatttgatctcttttctagctcttcctcattgcagctaccga 205  Q
    || | | ||||||| ||||||||||||||||| |||||||| || |||||||||| | |||||| || ||||||| ||| |||||||||||||||    |    
T  46642853 taggtaaaagatcggggcttgaggtaacattgacgatgatcatccgataaatcatcttcatttgttcccttttctggctgttcctcattgcagctgtgaa 46642952  T
Q  206 ctttagcagcttcttcttctttaaggacgagaatattcggttcagctactacttttttcaagacatcgctaactgaatcaaagtaatggttacctttcac 305  Q
    ||||||    |||||| |||| |||  | |||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| | |||||||||    
T  46642953 ctttaga---ttcttcctcttcaagctcaagaatattcggttcagctaccactttgttcaagacatcgctaacagaatcaaagtaatgatcacctttcac 46643049  T
Q  306 tagttttctccttgaaaacttctgaacaccaggaataagaaaaaccagataatcatcggaggtaa 370  Q
     ||||||||||| |||||||| | |||||||||||||||||| ||||||||||| | ||||||||    
T  46643050 aagttttctcctcgaaaacttatcaacaccaggaataagaaagaccagataatctttggaggtaa 46643114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 18375845 - 18376213
Alignment:
Q  1 ctcaatgaattaataggcacgtatttcaattcccttagatcagatggctttccgtcatgcaccaaactagcatcagtaaccatgaatttgatgtgatctt 100  Q
    |||| ||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||| ||||||||||    
T  18375845 ctcactgaattaataggctcatatttcaattcccttagatcagatggctttctgtcatgcaccaaactggcttcagtaaccatgaatttcatgtgatctt 18375944  T
Q  101 tactgtaagaagaagatcgaggcttgaggtaacattggcgatgatcgtcagataaatcatgtccatttgatctcttttctagctcttcctcattgcagct 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  18375945 tactgtaagtagaagatcgaggcttgaggtaacattggcgatgatcgtcagataaatcatgtccatttgatcctttttctagctcttcctcattgcagct 18376044  T
Q  201 accgactttagcagcttcttcttctttaaggacgagaatattcggttcagctactacttttttcaagacatcgctaactgaatcaaagtaatggttacct 300  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  18376045 accgactttagctgcttcttcttctttgaggacgagaatattcggttcagctactacttttttcaaaacatcgctaactgaatcaaagtaatggtcacct 18376144  T
Q  301 ttcactagttttctccttgaaaacttctgaacaccaggaataagaaaaaccagataatcatcggaggta 369  Q
    |||||||||||||| ||||||||||||| ||| || ||||||||||||||||||||||||||| |||||    
T  18376145 ttcactagttttcttcttgaaaacttctcaaccccgggaataagaaaaaccagataatcatcgaaggta 18376213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 151; Significance: 8e-80; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 15769166 - 15769530
Alignment:
Q  1 ctcaatgaattaataggcacgtatttcaattcccttagatcagatggctttccgtcatgcaccaaactagcatcagtaaccatgaatttgatgtgatctt 100  Q
    |||| |||||||| |||||   ||||||| ||||||||||||||||| |||||| || | |||||||| | |||| |||||||||| || ||  |||| |    
T  15769166 ctcactgaattaacaggcatagatttcaactcccttagatcagatggatttccgccacgtaccaaactggtatcaataaccatgaactttatacgatcat 15769265  T
Q  101 tactgtaagaagaagatcgaggcttgaggtaacattggcgatgatcgtcagataaatcatgtccatttgatctcttttctagctcttcctcattgcagct 200  Q
    || |||||| ||||||||| |||||||||||||||||||||||||| ||||||| ||||| | ||||||||| ||||||| || |||||||||| |||||    
T  15769266 tattgtaagtagaagatcggggcttgaggtaacattggcgatgatcatcagatacatcatcttcatttgatcccttttctggcccttcctcattacagct 15769365  T
Q  201 accgactttagcagcttcttcttctttaaggacgagaatattcggttcagctactacttttttcaagacatcgctaactgaatcaaagtaatggttacct 300  Q
    ||| ||||   |||||||||| ||    || ||||||||||||||||||||| |||||||  |||||||||| ||||| |||||||||||||| | ||||    
T  15769366 accaactt---cagcttcttcctc---gagcacgagaatattcggttcagctgctactttgctcaagacatcactaacagaatcaaagtaatgatgacct 15769459  T
Q  301 ttcactagttttctccttgaaaacttctgaacaccaggaataagaaaaaccagataatcatcggaggtaat 371  Q
    || || ||||| ||||| |||||||||| ||||||||||||||||||||||| |||||| | |||||||||    
T  15769460 tttacaagtttcctcctcgaaaacttctcaacaccaggaataagaaaaaccaaataatctttggaggtaat 15769530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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