View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14245_low_15 (Length: 377)
Name: NF14245_low_15
Description: NF14245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14245_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 154 - 367
Target Start/End: Original strand, 4457606 - 4457819
Alignment:
| Q |
154 |
aagtatattcttgatacacagtttcagattaaggatcttgatcccatatgtttctttcttggtcttcaggtggcaagatccaaaggtgggacaactttga |
253 |
Q |
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| T |
4457606 |
aagtatattcttgatacacagtttcagattaaggatcttggtcccatatgtttctttcttggtcttgaggtggcaagatctaaaggtgggacagctttga |
4457705 |
T |
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| Q |
254 |
atcaaagaaaatacacattagaatttctttatgatagtggaattctttatgaaaaacctgttactaccccatgtaatccttccatcatattaagcagtga |
353 |
Q |
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| T |
4457706 |
atcaaagaaaatacacattagaacttctttatgatagtggaattctttatgaaaaacctgttactaccccatgtaatccttccatcaaattaagcagtga |
4457805 |
T |
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| Q |
354 |
aggtagcccatctt |
367 |
Q |
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| T |
4457806 |
aggtagcccatctt |
4457819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 14 - 159
Target Start/End: Original strand, 4403532 - 4403677
Alignment:
| Q |
14 |
ttctctttttggttagttctcagtctcaagttgaccattctatgttcgtaaaagcctcaacatcgtgttttgtggctttactagtctatgttgatgacat |
113 |
Q |
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| T |
4403532 |
ttctctttttggtttgttctcagtctcaagcggactattctatgctcgtaaaagcctcaacatcgtcttttgtggctttactagtctatgttgatgacat |
4403631 |
T |
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| Q |
114 |
agtcttagctggaaattccatgatagaaattaagcatatcaagtat |
159 |
Q |
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| T |
4403632 |
agtcttagctggaaatttcatgacagaaattaatcatatcaagtat |
4403677 |
T |
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