View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14245_low_17 (Length: 354)
Name: NF14245_low_17
Description: NF14245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14245_low_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 22779980 - 22779848
Alignment:
| Q |
19 |
aatctgaccttctatatctcaaacgtgtttaaatgatgctcctcaactgcctctgtttttgggttgtgtttccaaaaacaggtttgnnnnnnnggatatt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
22779980 |
aatctgaccttctatatctcaaacgtgtttaaatgatgctcctcaactgcctctgtttttgggttgtgtttccaaaaacaggtttgtttttttggatatt |
22779881 |
T |
|
| Q |
119 |
taagataaacatgtttagatttgtatatcaaca |
151 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
22779880 |
taagataaacatgtttagatttgtatatcaaca |
22779848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 302 - 354
Target Start/End: Complemental strand, 22779765 - 22779713
Alignment:
| Q |
302 |
ttttggaagcaatgctatgttactaatatcattatttaacttcctatgctact |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
22779765 |
ttttggaagcaatgctatgttactaatatcattatttaacttcccatgttact |
22779713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 210 - 345
Target Start/End: Complemental strand, 37604789 - 37604654
Alignment:
| Q |
210 |
caaaactgttttgaaatccactgttaaagagagaacatttagtaattaattatttggttatgctaagaactagattatgagcatatgcaaatttttggaa |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||| |||||||| | ||| |||||| |||||||||||||||||||||||||||| ||||| || |
|
|
| T |
37604789 |
caaaactgttttgaaatccactgttaaagagataatatttggtaattaagtctttagttatgttaagaactagattatgagcatatgcaaaattttgaaa |
37604690 |
T |
|
| Q |
310 |
gcaatgctatgttactaatatcattatttaacttcc |
345 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
37604689 |
gcaatgatatgttaataatatcattatttaacttcc |
37604654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 210 - 345
Target Start/End: Original strand, 46556204 - 46556339
Alignment:
| Q |
210 |
caaaactgttttgaaatccactgttaaagagagaacatttagtaattaattatttggttatgctaagaactagattatgagcatatgcaaatttttggaa |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||| |||||||| | ||| |||||| |||||||||||||||||||||||||||| ||||| || |
|
|
| T |
46556204 |
caaaactgttttgaaatccactgttaaagagataatatttggtaattaagtctttagttatgttaagaactagattatgagcatatgcaaaattttgaaa |
46556303 |
T |
|
| Q |
310 |
gcaatgctatgttactaatatcattatttaacttcc |
345 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
46556304 |
gcaatgatatgttaataatatcattatttaacttcc |
46556339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 48850875 - 48850919
Alignment:
| Q |
19 |
aatctgaccttctatatctcaaacgtgtttaaatgatgctcctca |
63 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48850875 |
aatctgaccttctatatctcaaacgtgtttaaatgatgctcctca |
48850919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University