View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14245_low_18 (Length: 348)
Name: NF14245_low_18
Description: NF14245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14245_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 10 - 327
Target Start/End: Original strand, 14355080 - 14355391
Alignment:
| Q |
10 |
tcgaagaatatatccactatcctaaattctaggtgcatgtttgccggtgcaccatactaatgtaatgaggttatgttgactggtgccaccattttctttc |
109 |
Q |
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| T |
14355080 |
tcgaataatacatccactatcctaaattctaggtgcatgtttgccggtgcaccatactaatg-----aggttatgttgactggtgccaccatttt-tttc |
14355173 |
T |
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| Q |
110 |
tttctatagtcataattgaattaaagaaaggataatgagtacttaaatacaaaaacaacaacatagtctaactcatataattaatcgatatgagttacga |
209 |
Q |
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| T |
14355174 |
tttctatagttataattgaattaaagaaaggataatgagtacttaaatacaaaaacaacaacatagtctaactcatataattaatcgatatgagttacga |
14355273 |
T |
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| Q |
210 |
tataagaaggaataatctcttttatttacccaagtatttgtcgtccttgcaagggtatgaacaaccgtgcatattcgtttatcagttatcagactttact |
309 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| || | |||||| |
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| T |
14355274 |
tataagaaggaataatctcttttatttatccaagtatttgtcgtccttgtaagggtatgaacaaccgtgcatattcgtttgtcagttaccaaattttact |
14355373 |
T |
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| Q |
310 |
ttaaagttgaaatgtaaa |
327 |
Q |
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||||||||| |||||||| |
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| T |
14355374 |
ttaaagttggaatgtaaa |
14355391 |
T |
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