View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14245_low_20 (Length: 339)
Name: NF14245_low_20
Description: NF14245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14245_low_20 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 13 - 339
Target Start/End: Complemental strand, 41333603 - 41333277
Alignment:
| Q |
13 |
aatatagtagattgataatagacattgcaaagagaaaaagatgaacctgctgtaaacaggatggacattccaggatggagaattaaccaaagtaagattg |
112 |
Q |
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| T |
41333603 |
aatatagtagattgataatagacattgcaaagagaaaaagatgaacctgctgtaaacaggatggacattccaggatggagaattaaccaaagtaagattg |
41333504 |
T |
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| Q |
113 |
gatatctgtatattatccgagtacatgatttcaatcaggtaaggcctagtataagtgagcttccccttgtgaaacttttgccaccacagttcaccttgtc |
212 |
Q |
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| T |
41333503 |
gatatctgtatattatccgagtacatgatttcaatcaggtaaggcctagtataagtgagcttccccttgtgaaacttttgccaccacagttcaccttgtc |
41333404 |
T |
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| Q |
213 |
catctagtgtgccattgttccctatttgaattcaataatcaatagaagcaaatattagttggactggtttatattttaattccaaaagcataacaggatt |
312 |
Q |
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| T |
41333403 |
catctagtgtgccattgttccctatttgaattcaataatcaatagaagcaaatattagttggactggtttatattttaattccaaaagcataacaggatt |
41333304 |
T |
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| Q |
313 |
gtacaagctcgatcttcaatcagcgac |
339 |
Q |
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| T |
41333303 |
gtacaagctcgatcttcaatcagcgac |
41333277 |
T |
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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 57 - 98
Target Start/End: Complemental strand, 29764878 - 29764837
Alignment:
| Q |
57 |
acctgctgtaaacaggatggacattccaggatggagaattaa |
98 |
Q |
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| T |
29764878 |
acctgctgtaaacaggatgaacattccatgatggagaattaa |
29764837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 162
Target Start/End: Original strand, 45075668 - 45075774
Alignment:
| Q |
56 |
aacctgctgtaaacaggatggacattccaggatggagaattaaccaaagtaagattggatatctgtatattatccgagtacatgatttcaatcaggtaag |
155 |
Q |
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| T |
45075668 |
aacctgctgtaaactggatggacaaaccaagaaggggaattgatcaaagtgagattggatatttggatttgatcagaatacataatctcaatcatgtatg |
45075767 |
T |
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| Q |
156 |
gcctagt |
162 |
Q |
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| T |
45075768 |
gcctagt |
45075774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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