View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14245_low_22 (Length: 327)
Name: NF14245_low_22
Description: NF14245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14245_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 308
Target Start/End: Complemental strand, 40998049 - 40997764
Alignment:
| Q |
18 |
gttgcaccgacacattgtgatgatttgtctatgcattaaaagattacataacatatcatttattttacgttgcaatgactcatagactgaatcttgattc |
117 |
Q |
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| T |
40998049 |
gttgcacctacacattgtgatgatttgtctatgcattaaaa-attacagaacatatcatttattttacgttgcaatgactcatagactgaatcttgattc |
40997951 |
T |
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| Q |
118 |
ttcatgtttgattcaaaaaccaagagagcagtgctcatttcgcagaaatatataaacaataataatcaccattaaaaaattataannnnnnnnnnnnnaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
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| T |
40997950 |
ttcatgtttgattcaaaaaccaagagagcagtgctcatttcgcagaaatatataaacaataataatcaccattaaaaaattacaa----ttttattttaa |
40997855 |
T |
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| Q |
218 |
aaataaaccacatataatatatctctttaattttctcttacttacttcctctattttgctaataatattattttttagcttaatttaatca |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40997854 |
aaataaaccacatataatatatctctttaattttctcttacttacttcctctattttgctaataatattattttttagcttaattcaatca |
40997764 |
T |
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