View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14245_low_27 (Length: 278)
Name: NF14245_low_27
Description: NF14245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14245_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 360399 - 360660
Alignment:
| Q |
1 |
aggaaatgttggaatcacctgatagcttccaataacatgaaagaaaaccatcaagttagcaatagcgataacccatggaggacgttcgagtgagacgagt |
100 |
Q |
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| T |
360399 |
aggaaatgttagaatcacctgatagcttccaataacatgaaagaaaaccatcaagttagcaatagcgataacccatggaggacgttcgagtgagacgagt |
360498 |
T |
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| Q |
101 |
acatcatcttctaccaaatctccaaatgcccaaaaaccggatacagcaacggtgagatagcaaagaataacaatggtgtatgcaacaacaacacctctcc |
200 |
Q |
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| T |
360499 |
acatcatcttctaccaaatctccaaatgcccaaaaaccggatacagcaacggtgagatagcaaagaataacaatggtgtatgcaacaacaacacctctcc |
360598 |
T |
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| Q |
201 |
acattggtactttggaaggtttttcttctgaagagggtaatgtagcttgaatctctagaacc |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
360599 |
acattggtactttggaaggtttttcttctgaagagggtaatgtagcttgaatctctagaacc |
360660 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 7978141 - 7978186
Alignment:
| Q |
177 |
tgtatgcaacaacaacacctctccacattggtactttggaaggttt |
222 |
Q |
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| T |
7978141 |
tgtatgcaacaacaactcctctccacattggaaccttggatggttt |
7978186 |
T |
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