View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14245_low_29 (Length: 260)
Name: NF14245_low_29
Description: NF14245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14245_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 243
Target Start/End: Original strand, 48472994 - 48473215
Alignment:
| Q |
17 |
aatatttgcaaggtccgtgttcaaaccccaaccatcacaaaaaagaaaatacagagaagattgaagaagatatatttttccagtcaatttggtttaaaac |
116 |
Q |
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| T |
48472994 |
aatatttgcaaggtccgtgttcaaaccccaaccaccacaaaaaagaaaatacagagaagattgaagaagatatatttttccagtcaatttggtttaaaac |
48473093 |
T |
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| Q |
117 |
ttggattggcttgtagtgtagtaatcacgagctggctggcatggtgcttgagagacagttatgaatgcagcatcataatatttgatgtcctttctcgtct |
216 |
Q |
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||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48473094 |
ttggattggcttgtagt-----agtcacgagctggctggcatggtgcttgagagacagttatgaatgcagcatcataatatttgatgtcctttctcgtct |
48473188 |
T |
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| Q |
217 |
tatttctagagttcttttaaagatgat |
243 |
Q |
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||||||||||||||||||||||||||| |
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| T |
48473189 |
tatttctagagttcttttaaagatgat |
48473215 |
T |
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