View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14245_low_3 (Length: 717)

Name: NF14245_low_3
Description: NF14245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14245_low_3
NF14245_low_3
[»] chr2 (1 HSPs)
chr2 (12-697)||(40998026-40998716)


Alignment Details
Target: chr2 (Bit Score: 601; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 601; E-Value: 0
Query Start/End: Original strand, 12 - 697
Target Start/End: Original strand, 40998026 - 40998716
Alignment:
Q  12 atcatcacaatgtgtcggtgcaacatttacaaaattcggtccaacttacttaactagctcaatcctggatttttactggtttaaacgattttagtttggt 111  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  40998026 atcatcacaatgtgtaggtgcaacatttacaaaattcggtccaacttacttaactagctcaatcgtggattttgactggtttaaacgattttagtttggt 40998125  T
Q  112 tttt-ctca-gttcttttgttaccttgctatcgtctatttatgtagaaaaagttacttttattacctctatagttttaacaattctactaaatgcataga 209  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  40998126 tttttctcaagttcttttgttaccttgctatcgtctatttatgtagaaaaagttatttttattacctctatagttttaacaattctactaaatgcataga 40998225  T
Q  210 catatcatcacttagattgatcaattcgatcttattttcattaccttgctattgtctatttatcgtgattcaaacacaccatggcaaacaactctcttcc 309  Q
    || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40998226 cagatcatcacttagattgatcaattcgatcttatttttattaccttgctattgtctatttatcgtgattcaaacacaccatggcaaacaactctcttcc 40998325  T
Q  310 cccactctcaaccctcgccgtccccatttgaaaactcccataatcaagtgtttggcaagctaattcaattttacggaagtga---cacattttgaaaact 406  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||| ||||   |||||||||||||||    
T  40998326 cccactctcaaccctcgccgtccccatttgaaaactcccataattaagtgtttggtatgctaattcaattttacggaggtgatgacacattttgaaaact 40998425  T
Q  407 taagttgacccaagggccaagagccaagcaatccatccaagactcaaattcatcatatttgtatggacgaaaaacacattttaacctttttataattata 506  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  40998426 taagttgacccaagggccaagagccaagcaatccatccaagactcaaactcatcatatttgtaaggaccaaaaacacattttaacctttttataattata 40998525  T
Q  507 cacaacacacccctattggtggtttgggcatctagcaaatatagtttgagtagacagatcaatttacacaaaagattatataattggctccactacttac 606  Q
    || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40998526 cagaacgcacccctattggtggtttgggcatctagcaaatatagtttgagtagacagatcaatttacacaaaagattatataattggctccactacttac 40998625  T
Q  607 gctctgtttgggtataataatgattgaaatctggaaatcacatctagagatgagaaatttatctcaatgacagcaataacaagcacgtaga 697  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40998626 gctctgtttgggtataataatgattgaaatctggaaatcacatctagagatgagaaatttatctcaatgacagcaataacaagcacgtaga 40998716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University