View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14245_low_31 (Length: 248)
Name: NF14245_low_31
Description: NF14245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14245_low_31 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 6 - 248
Target Start/End: Original strand, 37066281 - 37066523
Alignment:
| Q |
6 |
agagaagcagaatgaatctaaatgaaaattgacgaaataaatacgttttgggatttatccaagtttaaaaaaccactcttaaagaataaagaatggagac |
105 |
Q |
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| T |
37066281 |
agagaagaagaatgaatctaaatgaaaattgacgaaataaatacgttttgggatttatccaagtttaaaaaaccactcttaaagaataaaaaatggagac |
37066380 |
T |
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| Q |
106 |
agtatacatatgactttgatttgaaatcaaattttcaaatcatgaaacggagaaggtttatatctatgatgatgatcatgagtttaatgttgtctgtcgt |
205 |
Q |
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| T |
37066381 |
agtatacatatgactatgatttgaaatcaaattttcaaatcatgaaacggagaaggtttatatctatgatgatgatcatgagtttaatgttgtctgccgt |
37066480 |
T |
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| Q |
206 |
tttgtcatgacaagcttttgcagcgttaagcgttttgccgttt |
248 |
Q |
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| T |
37066481 |
tttgtcatgacaagcttttgcagcgttaagcgttttgccgttt |
37066523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 14 - 149
Target Start/End: Original strand, 41608781 - 41608916
Alignment:
| Q |
14 |
agaatgaatctaaatgaaaattgacgaaataaatacgttttgggatttatccaagtttaaaaaaccactcttaaagaataaagaatggagacagtataca |
113 |
Q |
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| T |
41608781 |
agaatgaatctaaatgaaaattgacgaaataaatacgttttgggatttatccaagtttaaaaaaccactcttaaagaataaaaaatggagacagtataca |
41608880 |
T |
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| Q |
114 |
tatgactttgatttgaaatcaaattttcaaatcatg |
149 |
Q |
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| T |
41608881 |
tatgactatgatttgaaatcaaattttcaaatcatg |
41608916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 192 - 248
Target Start/End: Original strand, 41608914 - 41608970
Alignment:
| Q |
192 |
atgttgtctgtcgttttgtcatgacaagcttttgcagcgttaagcgttttgccgttt |
248 |
Q |
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| T |
41608914 |
atgttgtctgccgttttgtcatgacaagcttttgcagcgttaagcgttttgccgttt |
41608970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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