View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14245_low_32 (Length: 245)
Name: NF14245_low_32
Description: NF14245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14245_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 24045157 - 24045395
Alignment:
| Q |
1 |
ttcattaatatatctaagtacctgtttggatacgcgttttccgaccctcaaaagcgagtttagagattcaaaagcgatttcaccannnnnnn-aagatgt |
99 |
Q |
| |
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||||||| ||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
24045157 |
ttcattactatatctaagtacctgtttgggtatgcgttttccgaccc-caaaagcgagtttagagattcaaaagcgatttcaccattttttttaagatgt |
24045255 |
T |
|
| Q |
100 |
ttgggtaactgcaaaagcgcttcaatcagtcgtgattctagctccaaacccacgtttcctcaaagccataaattggagcttctgcggctgttaaaatcaa |
199 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24045256 |
ttgggtaactgcaaaagcgcttcaatcagtcgtgattctagctccaaacccacgtttcctcaaagccataaattggagcttctgcggctgttaaaatcaa |
24045355 |
T |
|
| Q |
200 |
ttctgcaaaagccccaaatttgtttccagctttacccttt |
239 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
24045356 |
ttctgcaaaagccccaaatttgtttccagctttacccttt |
24045395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 20 - 238
Target Start/End: Original strand, 36547539 - 36547755
Alignment:
| Q |
20 |
acctgtttggatacgcgttttccgaccctcaaaagcgagtttagagattcaaaagcgatttcaccannnnnnnaagatgtttgggtaactgcaaaagcgc |
119 |
Q |
| |
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||||||||||||||||||||||| | || ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
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| T |
36547539 |
acctgtttggatacgcgttttccaatcc-caaaagcgagtttagagattcaaaagccatttcaccatttttt-aagatgtttgggtaactgcaaaagcgc |
36547636 |
T |
|
| Q |
120 |
ttcaatcagtcgtgattctagctccaaacccacgtttcctcaaagccataaattggagcttctgcggctgttaaaatcaattctgcaaaagccccaaatt |
219 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
36547637 |
ttcaatcagccgtgattctagctccaaacccacgtttcctcaaagccataaattggagcttctgcggctgctaaaatcaattctgcaaaagccccaaatt |
36547736 |
T |
|
| Q |
220 |
tgtttccagctttaccctt |
238 |
Q |
| |
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||||||||||||||||||| |
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| T |
36547737 |
tgtttccagctttaccctt |
36547755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 2175800 - 2175581
Alignment:
| Q |
18 |
gtacctgtttggatacgcgttttccgaccctcaaaagcgagtttagagattcaaaagcgatttcaccannnnnnnaagatgtttgggtaactgcaaaagc |
117 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| | |||| |||| |||||| || ||||||||| ||||||||||| ||||||||||||| |
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| T |
2175800 |
gtacctgtttggatacgcgttttcc-accctcaaacgtgagtctagatgttcaaacgccatttcaccatttttt-aagatgtttggataactgcaaaagc |
2175703 |
T |
|
| Q |
118 |
gcttcaatcagtcgtgattctagctccaaacccacgtttcctcaaagccataaattggagcttctgcggctgttaaaatcaattctgcaaaagccccaaa |
217 |
Q |
| |
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||||| | || ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2175702 |
gcttctaccaaacgtgaatctagctccaaacccacgtttcctcaaagccacaaattggagcttctgcggctgttaaaatcaattctgcaaaagccccaaa |
2175603 |
T |
|
| Q |
218 |
tttgtttccagctttacccttt |
239 |
Q |
| |
|
||| |||||||||||||||||| |
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|
| T |
2175602 |
tttatttccagctttacccttt |
2175581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 47218279 - 47218060
Alignment:
| Q |
18 |
gtacctgtttggatacgcgttttccgaccctcaaaagcgagtttagagattcaaaagcgatttcaccannnnnnnaagatgtttgggtaactgcaaaagc |
117 |
Q |
| |
|
||||||||||||||||||||||| | | ||||||| | |||| |||| |||||| || ||||||||| |||||||||||||||||||||||| |
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| T |
47218279 |
gtacctgtttggatacgcgtttttc-agcctcaaacgtgagtctagatgttcaaatgccatttcaccatttttg-aagatgtttgggtaactgcaaaagt |
47218182 |
T |
|
| Q |
118 |
gcttcaatcagtcgtgattctagctccaaacccacgtttcctcaaagccataaattggagcttctgcggctgttaaaatcaattctgcaaaagccccaaa |
217 |
Q |
| |
|
||||| | || ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47218181 |
gcttctaccaaacgtgaatctagctccaaacccacgtttcctcaaagccacaaattggagcttctgcggctgttaaaatcaattctgcaaaagccccaaa |
47218082 |
T |
|
| Q |
218 |
tttgtttccagctttacccttt |
239 |
Q |
| |
|
||| |||||||||||||||||| |
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|
| T |
47218081 |
tttatttccagctttacccttt |
47218060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 234
Target Start/End: Complemental strand, 24771497 - 24771439
Alignment:
| Q |
176 |
agcttctgcggctgttaaaatcaattctgcaaaagccccaaatttgtttccagctttac |
234 |
Q |
| |
|
|||||||||| || ||||||||||||||||| || ||||||||| ||||||||||||| |
|
|
| T |
24771497 |
agcttctgcgtctattaaaatcaattctgcataaaccccaaattaatttccagctttac |
24771439 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 13 - 239
Target Start/End: Complemental strand, 20830838 - 20830616
Alignment:
| Q |
13 |
tctaagtacctgtttggatacgcgttttccgaccctcaaaagcgagtttagagattcaaaagcgatttcaccannnnnnnaagatgtttgggtaactgca |
112 |
Q |
| |
|
|||| ||||||||||||||||||||||||| | ||||||| |||||| |||| |||||| | ||||||||| ||| ||||||||||||||| |
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| T |
20830838 |
tctatgtacctgtttggatacgcgttttcc-agcctcaaacgcgagtctagatgttcaaacaccatttcaccatttttg-aag--gtttgggtaactgca |
20830743 |
T |
|
| Q |
113 |
aaagcgcttcaatcagtcgtgattctagctccaaacccacgtttcctcaaagccataaattggagcttctgcggctgttaaaatcaattctgcaaaagcc |
212 |
Q |
| |
|
|||||||||| | || ||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20830742 |
aaagcgcttctaccaaacgtgaatctagctccaaacccacctttcctcaaagccacaaattggagcttctgcggctgttaaaatcaattctgcaaaagcc |
20830643 |
T |
|
| Q |
213 |
ccaaatttgtttccagctttacccttt |
239 |
Q |
| |
|
||||||| |||||||||||||||||| |
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|
| T |
20830642 |
tcaaatttatttccagctttacccttt |
20830616 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 235
Target Start/End: Original strand, 15576086 - 15576145
Alignment:
| Q |
176 |
agcttctgcggctgttaaaatcaattctgcaaaagccccaaatttgtttccagctttacc |
235 |
Q |
| |
|
|||||||||| ||||||| |||||||||| || ||||||||| ||||||||||||||| |
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|
| T |
15576086 |
agcttctgcgactgttaatatcaattctgttgaaaccccaaattcgtttccagctttacc |
15576145 |
T |
|
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