View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14245_low_33 (Length: 241)
Name: NF14245_low_33
Description: NF14245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14245_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 11441360 - 11441313
Alignment:
| Q |
178 |
gagaaaacaattaaatagcgtttgtattcatcttatttttccatcaat |
225 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
11441360 |
gagaacacaattaaatagcgtttgtattcatcttatttttccatcaat |
11441313 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 279341 - 279295
Alignment:
| Q |
179 |
agaaaacaattaaatagcgtttgtattcatcttatttttccatcaat |
225 |
Q |
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|||| ||||| ||| || ||||||||||||||||||||||||||||| |
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| T |
279341 |
agaacacaatgaaacagtgtttgtattcatcttatttttccatcaat |
279295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 636511 - 636557
Alignment:
| Q |
179 |
agaaaacaattaaatagcgtttgtattcatcttatttttccatcaat |
225 |
Q |
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|||| ||||| ||| || ||||||||||||||||||||||||||||| |
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| T |
636511 |
agaacacaatgaaacagtgtttgtattcatcttatttttccatcaat |
636557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 822314 - 822360
Alignment:
| Q |
179 |
agaaaacaattaaatagcgtttgtattcatcttatttttccatcaat |
225 |
Q |
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|||| ||||| ||| || ||||||||||||||||||||||||||||| |
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| T |
822314 |
agaacacaatgaaacagtgtttgtattcatcttatttttccatcaat |
822360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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