View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14245_low_35 (Length: 235)
Name: NF14245_low_35
Description: NF14245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14245_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 38629651 - 38629868
Alignment:
| Q |
1 |
caattcaagggtatatgtgcaatccagtgtaatagaacatgaaatagtgaattactcttcgaattatatatgttggattggatcatttcaatatttactg |
100 |
Q |
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| T |
38629651 |
caattcaagggtatatgtgcaatccagtgtaatagaacatgaaatagtgaattactcttcgaattatatatgttggattggatcatttcaatatttactg |
38629750 |
T |
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| Q |
101 |
cctacagatttggttcttatttggtgactaattattcagctgacctcttcaaattgtatgcagtagaactagtccgattgcaagaacatttttacaggaa |
200 |
Q |
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| T |
38629751 |
cctatagatttggttcttatttggtgactaattattcggcagacctcttcaaattgtatgcagtagaactagtctgattgcaagaacatttttacaggaa |
38629850 |
T |
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| Q |
201 |
atacttgtatgaactatg |
218 |
Q |
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| T |
38629851 |
atacttgtatgaactatg |
38629868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 38696606 - 38696449
Alignment:
| Q |
1 |
caattcaagggtatatgtgcaatccagtgtaatagaacatgaaa---tagtgaattact---cttcgaattatatatgttggattggatcatttcaatat |
94 |
Q |
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||||||||| ||||||||| |||| ||||||||| ||| ||||| |||||||||||| ||| ||||||| | |||||||| | |||||| || |
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| T |
38696606 |
caattcaagtgtatatgtgaaatcaagtgtaataaaacgtgaaaaggtagtgaattactactctttgaattatgtctgttggat-----cctttcaaaat |
38696512 |
T |
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| Q |
95 |
ttactgcctacagatttggttcttatttggtgactaattattcagctgacctcttcaaattgtatg |
160 |
Q |
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| T |
38696511 |
ttactccttacagatttggttgtt---tgatgacttattatccagttgacctcttcaaattgtatg |
38696449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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