View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14245_low_4 (Length: 632)
Name: NF14245_low_4
Description: NF14245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14245_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 495; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 15 - 617
Target Start/End: Complemental strand, 51828979 - 51828395
Alignment:
| Q |
15 |
tcattcacaaagcgtgtgcagtttctctcatctcatcatttctacagtagttgttgtgttgtgtattctcaaacaacaactccttcaacccactttctct |
114 |
Q |
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| T |
51828979 |
tcattcacaaagcgtgtgcagtttctctcatctcatcatttgtacagtagtt--------------tctcaaacaacaactccttcaacccactctctct |
51828894 |
T |
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| Q |
115 |
tctgtagattccaatgtcgacttcatcggacatttctggtttatccggcaacaaactgacaaaatcatcggagaaacctacgttttctcaaacttgtaat |
214 |
Q |
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| T |
51828893 |
tctgtagattccaatgtcgacttcatcggacatttctggtttatccggcaacaaactgacaaaatcatcggagaaacctacgttttctcaaacttgtaat |
51828794 |
T |
|
| Q |
215 |
ctattgaggcaatacctcaaggagaagaagggtagtttcgaaggctttaaccttcacactcctgaaacaaatggtaaaaataataatattattattatta |
314 |
Q |
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| T |
51828793 |
ctattgaggcaatacctcaaggagaagaagggtagtttcgaaggctttaaccttcacactcctgaaacaaatggtaaaaaaaataatattattatt---- |
51828698 |
T |
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| Q |
315 |
ttttcaattcagttcctaaaattttgggatttagaatgttgaatcaaactaagtctcaaatagtcttt-cattaaatgaacttggtcaaaaacagagtat |
413 |
Q |
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| T |
51828697 |
--ttcaattcagttcctaaaattttgggatttagaatgttgaatcaaactaagtctcaaatagtcttttcattaaatgaacttggtcaaaaacagagtat |
51828600 |
T |
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| Q |
414 |
aatgtcatttcagatattttcc-ttatttttctccattccgttacaacaactgggttatttatttaagttttctttttcttttcaatctacagggtcatc |
512 |
Q |
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| T |
51828599 |
aatgtcatttcagatattttcccttatttttcttcattcggttacaacaactgggttatttatttaagttttctttttcttttcaatctacagggtcatc |
51828500 |
T |
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| Q |
513 |
acctggttcatcttctcactctggaataaccatggatttatttcccacaaacgtgacaccgaaaaaccttacaactatggattttttctttccaaggtga |
612 |
Q |
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| T |
51828499 |
acctggttcatcttctcactctggaataaccatggatttatttcccacaaacgtgaccccgaaaaaccttacaactatggattttttctttccaaggtga |
51828400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 542 - 610
Target Start/End: Complemental strand, 51825594 - 51825526
Alignment:
| Q |
542 |
ccatggatttatttcccacaaacgtgacaccgaaaaaccttacaactatggattttttctttccaaggt |
610 |
Q |
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| T |
51825594 |
ccatggacttatttcccacaaacgtgacaccaaaaaacgttacacctgtggattctttgtctccaaggt |
51825526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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