View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14245_low_5 (Length: 545)
Name: NF14245_low_5
Description: NF14245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14245_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 1e-98; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 341 - 527
Target Start/End: Complemental strand, 26260984 - 26260798
Alignment:
| Q |
341 |
caaaaaactatataagtaacataacactatcttttacattcaatttttcacactctaatttctcaaacagccaacttccaccttatactctttcaaaaat |
440 |
Q |
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| T |
26260984 |
caaaaaactatataagtaacataacactatcttttacattcaatttttcacactctaatttctcaaacagccaacttccaccttatactctttcaaaaat |
26260885 |
T |
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| Q |
441 |
cttagaaaacgatattgattttgagaactttgagttattttctatacggaaatatttgtgtgttagagtgtgattctctagggtttc |
527 |
Q |
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| T |
26260884 |
cttagaaaacgataatgattttgagaactttgagttattttctatacggaaatatttgtgtgttagagtgtgattctctagggtttc |
26260798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 114 - 261
Target Start/End: Complemental strand, 26261214 - 26261064
Alignment:
| Q |
114 |
aatgtgtgaatcgattcacacaaactcactgttttgtgaga---nnnnnnnnnnnnngacaaactgttttgtgagaattgtttctctcattgatgcgaaa |
210 |
Q |
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| T |
26261214 |
aatgtatgaatcgattcacacaaactcactgttttgtgagaatttttttttttttttgacaaactgttttgtgagaattgtttctctcattgatgcgaaa |
26261115 |
T |
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| Q |
211 |
tgtttcactctttttgttttacaaggattgtattaaaaaacatgtgtgaat |
261 |
Q |
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| T |
26261114 |
tgtttcactttttttgttttacaaggactgtattaaaaaacatgtgtgaat |
26261064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 26261304 - 26261262
Alignment:
| Q |
15 |
aatatcaagatgacaatccatgttgaaatctcataattacatg |
57 |
Q |
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| T |
26261304 |
aatatcaagatgacaatccatgttgaaatctcatacttacatg |
26261262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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