View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14245_low_9 (Length: 448)

Name: NF14245_low_9
Description: NF14245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14245_low_9
NF14245_low_9
[»] chr6 (2 HSPs)
chr6 (1-428)||(21005483-21005910)
chr6 (364-418)||(21005990-21006044)
[»] scaffold0557 (5 HSPs)
scaffold0557 (359-421)||(5969-6031)
scaffold0557 (359-418)||(5885-5944)
scaffold0557 (285-325)||(5969-6009)
scaffold0557 (359-421)||(5021-5083)
scaffold0557 (358-418)||(5107-5167)
[»] scaffold0442 (4 HSPs)
scaffold0442 (359-421)||(9363-9425)
scaffold0442 (359-418)||(9279-9338)
scaffold0442 (359-421)||(8386-8448)
scaffold0442 (285-325)||(9363-9403)
[»] scaffold0115 (3 HSPs)
scaffold0115 (285-325)||(46896-46936)
scaffold0115 (359-418)||(46961-47020)
scaffold0115 (381-421)||(46896-46936)
[»] scaffold0014 (1 HSPs)
scaffold0014 (1-53)||(66809-66861)


Alignment Details
Target: chr6 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 21005483 - 21005910
Alignment:
Q  1 acaaataatacatcgtacttaacgtgaattctttcaatgaagttatccccatgcgttgtatagttagaaacactaatagtgagattacaaaaccttcaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21005483 acaaataatacatcgtacttaacgtgaattctttcaatgaagttatccccatgcgttgtatagttagaaacactaatagtgagattacaaaaccttcaaa 21005582  T
Q  101 tctaaaactctcataacccctggccactaagaaaagggacattagaaatactcccacatcgacggaaaggtctattcaatacatgttgatcaaatggttg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21005583 tctaaaactctcataacccctggccactaagaaaagggacattagaaatactcccacatcgacggaaaggtctattcaatacatgttgatcaaatggttg 21005682  T
Q  201 tgtgaataaaaacacaaacatgaatgttatttcacctgccaacattattccaactcctcttgttgttatccaaaactttaagcctcaaatctatcctgca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  21005683 tgtgaataaaaacacaaacatgaatgttatttcacctgccaacattattccaactcctcttgttgttatccaaaactttaagcctcaaatctaccctgca 21005782  T
Q  301 agtgttcaacaggagaagaacaacaccgtcatgattgctatggtttcaactcctagtagtgtgaatcaaaacatgcagcctcaaatctaccatgcaagtg 400  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21005783 agtgttcaacaggagaagaataacaccgtcatgattgctatggtttcaactcctagtagtgtgaatcaaaacatgcagcctcaaatctaccatgcaagtg 21005882  T
Q  401 ttcaacaaaacaagaacaacaccctcaa 428  Q
    ||||||||||||||||||||||||||||    
T  21005883 ttcaacaaaacaagaacaacaccctcaa 21005910  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 364 - 418
Target Start/End: Original strand, 21005990 - 21006044
Alignment:
Q  364 aatcaaaacatgcagcctcaaatctaccatgcaagtgttcaacaaaacaagaaca 418  Q
    |||||||||||||||| ||||||||| | || |||||||||||||||||||||||    
T  21005990 aatcaaaacatgcagcgtcaaatctatcctgaaagtgttcaacaaaacaagaaca 21006044  T

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Target: scaffold0557 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 5)
Name: scaffold0557
Description:

Target: scaffold0557; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 359 - 421
Target Start/End: Complemental strand, 6031 - 5969
Alignment:
Q  359 gtgtgaatcaaaacatgcagcctcaaatctaccatgcaagtgttcaacaaaacaagaacaaca 421  Q
    |||| |||||||||||||| | |||||||||||||||||||||||||||  | ||||||||||    
T  6031 gtgttaatcaaaacatgcaccatcaaatctaccatgcaagtgttcaacaggagaagaacaaca 5969  T

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Target: scaffold0557; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 359 - 418
Target Start/End: Complemental strand, 5944 - 5885
Alignment:
Q  359 gtgtgaatcaaaacatgcagcctcaaatctaccatgcaagtgttcaacaaaacaagaaca 418  Q
    |||| ||||||| |||||| | ||||||||||| || |||||||||||||||||||||||    
T  5944 gtgttaatcaaagcatgcaacgtcaaatctaccctggaagtgttcaacaaaacaagaaca 5885  T

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Target: scaffold0557; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 285 - 325
Target Start/End: Complemental strand, 6009 - 5969
Alignment:
Q  285 tcaaatctatcctgcaagtgttcaacaggagaagaacaaca 325  Q
    ||||||||| | |||||||||||||||||||||||||||||    
T  6009 tcaaatctaccatgcaagtgttcaacaggagaagaacaaca 5969  T

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Target: scaffold0557; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 421
Target Start/End: Original strand, 5021 - 5083
Alignment:
Q  359 gtgtgaatcaaaacatgcagcctcaaatctaccatgcaagtgttcaacaaaacaagaacaaca 421  Q
    |||| |||||||||||||| | |||||||||| ||| ||||||||||||  | ||||||||||    
T  5021 gtgttaatcaaaacatgcaccatcaaatctacaatgaaagtgttcaacatgagaagaacaaca 5083  T

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Target: scaffold0557; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 418
Target Start/End: Original strand, 5107 - 5167
Alignment:
Q  358 agtgtgaatcaaaacatgcagcctcaaatctaccatgcaagtgttcaacaaaacaagaaca 418  Q
    ||||| ||| ||| |||| ||| ||||||||||| |  |||||||||||||||||||||||    
T  5107 agtgttaattaaagcatgtagcgtcaaatctaccctagaagtgttcaacaaaacaagaaca 5167  T

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Target: scaffold0442 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: scaffold0442
Description:

Target: scaffold0442; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 359 - 421
Target Start/End: Complemental strand, 9425 - 9363
Alignment:
Q  359 gtgtgaatcaaaacatgcagcctcaaatctaccatgcaagtgttcaacaaaacaagaacaaca 421  Q
    |||| |||||||||||||| | |||||||||||||||||||||||||||  | ||||||||||    
T  9425 gtgttaatcaaaacatgcaccatcaaatctaccatgcaagtgttcaacagtagaagaacaaca 9363  T

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Target: scaffold0442; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 359 - 418
Target Start/End: Complemental strand, 9338 - 9279
Alignment:
Q  359 gtgtgaatcaaaacatgcagcctcaaatctaccatgcaagtgttcaacaaaacaagaaca 418  Q
    |||| ||||||| |||||| | ||||||||||| || |||||||||||||||||||||||    
T  9338 gtgttaatcaaagcatgcaacttcaaatctaccctggaagtgttcaacaaaacaagaaca 9279  T

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Target: scaffold0442; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 421
Target Start/End: Original strand, 8386 - 8448
Alignment:
Q  359 gtgtgaatcaaaacatgcagcctcaaatctaccatgcaagtgttcaacaaaacaagaacaaca 421  Q
    |||| |||||||||||||| | |||||||||||||  ||||||||||||  | ||||||||||    
T  8386 gtgttaatcaaaacatgcaccatcaaatctaccataaaagtgttcaacatgagaagaacaaca 8448  T

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Target: scaffold0442; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 325
Target Start/End: Complemental strand, 9403 - 9363
Alignment:
Q  285 tcaaatctatcctgcaagtgttcaacaggagaagaacaaca 325  Q
    ||||||||| | |||||||||||||||| ||||||||||||    
T  9403 tcaaatctaccatgcaagtgttcaacagtagaagaacaaca 9363  T

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Target: scaffold0115 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 46896 - 46936
Alignment:
Q  285 tcaaatctatcctgcaagtgttcaacaggagaagaacaaca 325  Q
    ||||||||| | |||||||||||||||||||||||||||||    
T  46896 tcaaatctaccatgcaagtgttcaacaggagaagaacaaca 46936  T

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Target: scaffold0115; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 418
Target Start/End: Original strand, 46961 - 47020
Alignment:
Q  359 gtgtgaatcaaaacatgcagcctcaaatctaccatgcaagtgttcaacaaaacaagaaca 418  Q
    |||| ||||||| |||||| | ||||||||||| || ||||||||||||| |||||||||    
T  46961 gtgttaatcaaagcatgcaacgtcaaatctaccctggaagtgttcaacaatacaagaaca 47020  T

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Target: scaffold0115; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 421
Target Start/End: Original strand, 46896 - 46936
Alignment:
Q  381 tcaaatctaccatgcaagtgttcaacaaaacaagaacaaca 421  Q
    |||||||||||||||||||||||||||  | ||||||||||    
T  46896 tcaaatctaccatgcaagtgttcaacaggagaagaacaaca 46936  T

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Target: scaffold0014 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 66809 - 66861
Alignment:
Q  1 acaaataatacatcgtacttaacgtgaattctttcaatgaagttatccccatg 53  Q
    |||||| ||| |||||| |||| |||||||||| | |||||||||||||||||    
T  66809 acaaattataaatcgtatttaatgtgaattcttccgatgaagttatccccatg 66861  T

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