View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14246_high_10 (Length: 447)
Name: NF14246_high_10
Description: NF14246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14246_high_10 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 149; Significance: 2e-78; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 266 - 447
Target Start/End: Complemental strand, 34870335 - 34870158
Alignment:
| Q |
266 |
tagatcatacaattattgtagttttgttttatctatttagcttaactcgtttgaatctgaatgttactacataagttattgagttagttgttgataaata |
365 |
Q |
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| T |
34870335 |
tagatcatgcaattattgtagttttgttttatctatttagcttaactcgtttgaatttgaatgttaatacataagttattgagtt----gttgataaata |
34870240 |
T |
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| Q |
366 |
gactaataatagaaagttaaaaaattgtacctttgtccagttggcctcactatgtcaagataacataacatatacactcttc |
447 |
Q |
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| T |
34870239 |
gactaataatagaaagtttaaaaattgtacctttgtccagttggcctcactatgtcaagataacataacatatacactcttc |
34870158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 135 - 273
Target Start/End: Complemental strand, 34870530 - 34870385
Alignment:
| Q |
135 |
ttcacgttttggatttttagggagagaataaacccactaaaatggagaaaatgctgataaataactaaatatataatccaaaaa-------gagtcaaca |
227 |
Q |
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| T |
34870530 |
ttcacgttttggatttttagagagagaataaacccactaaaatggagaaaatgctgataaataactaaatatataatccaaaaacaatgaggtgttaaca |
34870431 |
T |
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| Q |
228 |
atttaaatccactaattacgaaatgatgaaaatgcccctagatcat |
273 |
Q |
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| T |
34870430 |
atttaaacccactaattacgaaatgatgaaaatgcccctaaatcat |
34870385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 34870649 - 34870582
Alignment:
| Q |
16 |
ccctttacatgacttcctcttatacttgcatgtcgattttggtgaagaaattggtgaaatttgatgga |
83 |
Q |
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| T |
34870649 |
ccctttacatgacttcctcttatacttgcatgtggagtttggtgaagaaattggtgaaatttgatgga |
34870582 |
T |
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