View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14246_high_15 (Length: 336)
Name: NF14246_high_15
Description: NF14246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14246_high_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 15546522 - 15546197
Alignment:
| Q |
1 |
acaataccactttccaacaaccactggttcagaacaatcattgaaaattggaaagttgaaatttggtagcttgaaacgcaaggaatcatttgagcctaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15546522 |
acaataccactttccaacaaccactgattcagaacaatcattgaaaattggaaagttgaaatttggtagcttgaaacgcaaggaatcatttgagcctaaa |
15546423 |
T |
|
| Q |
101 |
gcttcgcttaaatggtagttgcggggagtgctagcattaagtttccaacnnnnnnncctcaataacccaggaggaattccatcagaggcaactgattttg |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15546422 |
gcttcgctgaaatggtagttgcggggagtgctagcattaagtttccaactttttttcctcaataacccaggaggaattccatcagaggcaactgattttg |
15546323 |
T |
|
| Q |
201 |
cgcgaaatccattaccttttttgattatttctacctgttgataatcattgaagggctccaaagcttttggtttaacatcacggacaaaactacaacataa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15546322 |
cgcgaaatccattaccttttttgattatttctacctgttgataatcattgaagggctccaaagcttttggtttaacatcacggacaaaactacaacataa |
15546223 |
T |
|
| Q |
301 |
acatgtggtcttgtcctcttcctttg |
326 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
15546222 |
acatgtggtcttgtcctcttcctttg |
15546197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 28 - 316
Target Start/End: Complemental strand, 15549268 - 15548980
Alignment:
| Q |
28 |
ttcagaacaatcattgaaaattggaaagttgaaatttggtagcttgaaacgcaaggaatcatttgagcctaaagcttcgcttaaatggtagttgcgggga |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
15549268 |
ttcagaacaatcattgaaaattggaaagttgaaatttggtagcttcaaacgcaaggaatcatttgagcctaaagcttcgcttaaatggtggttgcgggga |
15549169 |
T |
|
| Q |
128 |
gtgctagcattaagtttccaacnnnnnnncctcaataacccaggaggaattccatcagaggcaactgattttgcgcgaaatccattaccttttttgatta |
227 |
Q |
| |
|
|||||||| ||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||| |||||||||||||| |
|
|
| T |
15549168 |
gtgctagccttaagtttccacctttttttcctcaataacccaggaggaattccatctgaggcaactgattttgcacgaaaaccataaccttttttgatta |
15549069 |
T |
|
| Q |
228 |
tttctacctgttgataatcattgaagggctccaaagcttttggtttaacatcacggacaaaactacaacataaacatgtggtcttgtcc |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
15549068 |
tttctacctgttgataatcattgaagggctctaaagcttttggtttaacatcattgacaaaactacaacataaacatgtggtcatgtcc |
15548980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 15529014 - 15528689
Alignment:
| Q |
1 |
acaataccactttccaacaaccactggttcagaacaatcattgaaaattggaaagttgaaatttggtagcttgaaacgcaaggaatcatttgagcctaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
15529014 |
acaataccactttccaacaaccactgattcagaacaatcattcaaaattgaaaagttgaaatttggtagcttggaacgcaaggaatcatttgaacctaaa |
15528915 |
T |
|
| Q |
101 |
gcttcgcttaaatggtagttgcggggagtgctagcattaagtttccaacnnnnnnncctcaataacccaggaggaattccatcagaggcaactgattttg |
200 |
Q |
| |
|
|||| |||||| |||||||| |||||||||||||||| |||| |||| | ||| ||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
15528914 |
gcttggcttaattggtagttccggggagtgctagcataaagtgtccaccctttttcccttaataagccaggaggaattccatcagaggcaacggattttg |
15528815 |
T |
|
| Q |
201 |
cgcgaaatccattaccttttttgattatttctacctgttgataatcattgaagggctccaaagcttttggtttaacatcacggacaaaactacaacataa |
300 |
Q |
| |
|
| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| || |
|
|
| T |
15528814 |
catgaaaaccataaccttttttgattatttctacctgttgataatcattgaagggctccaaagctattggtttaacatcattgacaaaactacaacaaaa |
15528715 |
T |
|
| Q |
301 |
acatgtggtcttgtcctcttcctttg |
326 |
Q |
| |
|
||||||||| ||||||||||||||| |
|
|
| T |
15528714 |
gcatgtggtcatgtcctcttcctttg |
15528689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 15519275 - 15518950
Alignment:
| Q |
1 |
acaataccactttccaacaaccactggttcagaacaatcattgaaaattggaaagttgaaatttggtagcttgaaacgcaaggaatcatttgagcctaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
15519275 |
acaataccactttccaacaaccactgattcagaacaatcattcaaaattggaaaattgaaatttggtagcttggaacgcaaggaatcatttgagcctaaa |
15519176 |
T |
|
| Q |
101 |
gcttcgcttaaatggtagttgcggggagtgctagcattaagtttccaacnnnnnnncctcaataacccaggaggaattccatcagaggcaactgattttg |
200 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||| |||| |||| | ||||||||| ||||||||||||||||| || || | ||||||| |
|
|
| T |
15519175 |
gcttggcttaattggtagttgcggggagtgctagcataaagtgtccaccctttttccctcaataaaccaggaggaattccatctgaagcgatagattttg |
15519076 |
T |
|
| Q |
201 |
cgcgaaatccattaccttttttgattatttctacctgttgataatcattgaagggctccaaagcttttggtttaacatcacggacaaaactacaacataa |
300 |
Q |
| |
|
|| |||| |||| || || ||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
15519075 |
cgtgaaaaccatgactcttcttgattatttcaacctgctgataatcattgaagggctccaaaggttttggtttaacatcacggacaaaacgacaacataa |
15518976 |
T |
|
| Q |
301 |
acatgtggtcttgtcctcttcctttg |
326 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
15518975 |
acatgtggtcttgtcctcttcctttg |
15518950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 49 - 326
Target Start/End: Complemental strand, 15522879 - 15522602
Alignment:
| Q |
49 |
tggaaagttgaaatttggtagcttgaaacgcaaggaatcatttgagcctaaagcttcgcttaaatggtagttgcggggagtgctagcattaagtttccaa |
148 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||| |||| ||| |
|
|
| T |
15522879 |
tggaaagttgaaatttggtagcttggaacgcaaggaatcatttgaacctaaagcttggcttaattggtagttgcggggagtgctagcatgaagtgcccac |
15522780 |
T |
|
| Q |
149 |
cnnnnnnncctcaataacccaggaggaattccatcagaggcaactgattttgcgcgaaatccattaccttttttgattatttctacctgttgataatcat |
248 |
Q |
| |
|
| |||||||||||||||||||||||||| || || | |||||||| |||| |||| || || ||||||||||| | ||| |||||||||| |
|
|
| T |
15522779 |
ccttcttccctcaataacccaggaggaattccatttgaagcgatagattttgcttgaaaaccataactcttcttgattatttcaaactgctgataatcat |
15522680 |
T |
|
| Q |
249 |
tgaagggctccaaagcttttggtttaacatcacggacaaaactacaacataaacatgtggtcttgtcctcttcctttg |
326 |
Q |
| |
|
||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15522679 |
tgaagggcttcaaagctcttggtttaacatcatggacaaaactacaacataaacatgtggtcttgtcctcttcctttg |
15522602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 15551319 - 15551227
Alignment:
| Q |
1 |
acaataccactttccaacaaccactggttcagaacaatcattgaaaattggaaagttgaaatttggtagcttgaaacgcaaggaatcatttga |
93 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||| ||||||| | | |||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
15551319 |
acaataccattttccaacaaccactgattcagaacgatcattggacaatggaaagttgaaatccggtagcttagaacgcaaggaatcatttga |
15551227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University