View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14246_high_16 (Length: 303)
Name: NF14246_high_16
Description: NF14246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14246_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 13 - 288
Target Start/End: Complemental strand, 15874270 - 15873994
Alignment:
| Q |
13 |
gaagaatatgttcactgaggatgcaattgaaggctacaatgataatgatcttgcttggatattgtttgtggatggatgttctttgctacattttatggga |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
15874270 |
gaagaatatgttcactgaggatgcaattgaaggctacaatgataatgatcttgcttggatattgtttgtggatggatgttctttgctacactttatggga |
15874171 |
T |
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| Q |
113 |
aatgttgatgaccaatgcccggatgccctaaaccttaagtttgaccaactgatgcacatatggagagatactttattgttggagaatcaactt-ccaaga |
211 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
15874170 |
aatgttgatgaccaatgcccgaatgccctaaaccttaagtttgaccaactgatgcacatatggagagatactttattgttggagaatcaacttcccaaga |
15874071 |
T |
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| Q |
212 |
ataatgcttgagattctatgcgaagaaatgggtattgatttggaatttttaattaacaattcttttgatatgggtga |
288 |
Q |
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| T |
15874070 |
ataatgcttgagattctatgcgaagaaatgggtattgatttggaatttttaattaacaattcttttgatatgggtga |
15873994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 13 - 287
Target Start/End: Original strand, 15899799 - 15900073
Alignment:
| Q |
13 |
gaagaatatgttcactgaggatgcaattgaaggctacaatgataatgatcttgcttggatattgtttgtggatggatgttctttgctacattttatggga |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
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| T |
15899799 |
gaagaatatgttcactgaggatgcaattgaaggctacaatgataatgatcttgcttggatattgtttgtggatggatgttctttgctacactttatggaa |
15899898 |
T |
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| Q |
113 |
aatgttgatgaccaatgcccggatgccctaaaccttaagtttgaccaactgatgcacatatggagagatactttattgttggagaatcaacttccaagaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |
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| T |
15899899 |
aatgttgatgaccaatgcccggatgccctaaaccttaagtttgaccaactgatgcacatatggagagatacttttttgttggagaatcaacttccaaaaa |
15899998 |
T |
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| Q |
213 |
taatgcttgagattctatgcgaagaaatgggtattgatttggaatttttaattaacaattcttttgatatgggtg |
287 |
Q |
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||||||||||||||||||||||||||| | || |||||||||| |||||||||||||||||||||| ||||||| |
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| T |
15899999 |
taatgcttgagattctatgcgaagaaacgagtgttgatttggattttttaattaacaattcttttgcaatgggtg |
15900073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 13 - 272
Target Start/End: Original strand, 15920827 - 15921086
Alignment:
| Q |
13 |
gaagaatatgttcactgaggatgcaattgaaggctacaatgataatgatcttgcttggatattgtttgtggatggatgttctttgctacattttatggga |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
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| T |
15920827 |
gaagaatatgttcactgaggatgcaattgaaggctacaatgataatgatcttgcttggatattgtttgtggatggatgttctttgctacactttatggaa |
15920926 |
T |
|
| Q |
113 |
aatgttgatgaccaatgcccggatgccctaaaccttaagtttgaccaactgatgcacatatggagagatactttattgttggagaatcaacttccaagaa |
212 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || ||||||| | |
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| T |
15920927 |
aatgttgatgaccaatgcccggatgccctaaaccttaagtttgaccaactgatgcacatatggagagatactaatttgttagagaaccagcttccaaaca |
15921026 |
T |
|
| Q |
213 |
taatgcttgagattctatgcgaagaaatgggtattgatttggaatttttaattaacaatt |
272 |
Q |
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||||||||||||||||||| ||||| |||| |||||||| ||||||||||||||||| |
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| T |
15921027 |
aaatgcttgagattctatgcaaagaagcgggttatgatttgggatttttaattaacaatt |
15921086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 13 - 272
Target Start/End: Complemental strand, 14060685 - 14060426
Alignment:
| Q |
13 |
gaagaatatgttcactgaggatgcaattgaaggctacaatgataatgatcttgcttggatattgtttgtggatggatgttctttgctacattttatggga |
112 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||| | |||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||| |
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| T |
14060685 |
gaagaacatgttcactgaagatgcaattgaaggattcaatgacaatgatcttgcttggatattgttcgtggatggatgttccttgctacatttcatggga |
14060586 |
T |
|
| Q |
113 |
aatgttgatgaccaatgcccggatgccctaaaccttaagtttgaccaactgatgcacatatggagagatactttattgttggagaatcaacttccaagaa |
212 |
Q |
| |
|
||||| |||||||||| || || | ||||| ||||||||||||||| ||||| | |||||||||||| || ||||| ||||| ||||||||| |
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| T |
14060585 |
aatgtcgatgaccaatatcccgaagggctaaatcttaagtttgaccaattgatgtatatatggagagatgtttcgttgttagagaaccaacttccatacc |
14060486 |
T |
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| Q |
213 |
taatgcttgagattctatgcgaagaaatgggtattgatttggaatttttaattaacaatt |
272 |
Q |
| |
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||||||||||||| ||||| | |||| || ||||||||| | |||||| ||||||||| |
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| T |
14060485 |
aaatgcttgagattatatgcaatgaaagaggcattgatttgaactttttagttaacaatt |
14060426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 13 - 208
Target Start/End: Complemental strand, 14049314 - 14049119
Alignment:
| Q |
13 |
gaagaatatgttcactgaggatgcaattgaaggctacaatgataatgatcttgcttggatattgtttgtggatggatgttctttgctacattttatggga |
112 |
Q |
| |
|
|||||| |||||||| || |||||||||||||| | |||||| || |||||||||||||||||||| |||||||||||||| ||||| |||||||||| | |
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| T |
14049314 |
gaagaacatgttcacggaagatgcaattgaaggattcaatgacaacgatcttgcttggatattgttcgtggatggatgttccttgctgcattttatggaa |
14049215 |
T |
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| Q |
113 |
aatgttgatgaccaatgcccggatgccctaaaccttaagtttgaccaactgatgcacatatggagagatactttattgttggagaatcaacttcca |
208 |
Q |
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||||| |||||||||| || || | ||||| ||||||||||| ||| ||||| |||||||||||||| | ||||||||||| ||||||||| |
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| T |
14049214 |
aatgtcgatgaccaatatcctgaagggctaaatcttaagtttgatcaattgatgtacatatggagagatgttaagttgttggagaaccaacttcca |
14049119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 103
Target Start/End: Original strand, 21785704 - 21785739
Alignment:
| Q |
68 |
tggatattgtttgtggatggatgttctttgctacat |
103 |
Q |
| |
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||||| |||||||||||||||||||||||||||||| |
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| T |
21785704 |
tggatgttgtttgtggatggatgttctttgctacat |
21785739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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