View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14246_high_18 (Length: 247)
Name: NF14246_high_18
Description: NF14246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14246_high_18 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 24 - 247
Target Start/End: Complemental strand, 28939467 - 28939243
Alignment:
| Q |
24 |
agatgtcattagataataactcttctctttgggatatatgtcattttgctaagcagaaacatttaccttttcaatctagtatttcacatgctttttcaaa |
123 |
Q |
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| T |
28939467 |
agatgtcatcatataataattcttctttgtgagatatatgtcattttgctaagtggaaacatttaccttttcaatctagtatttcacatgctttttcaaa |
28939368 |
T |
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| Q |
124 |
ttttgagcttttacattttaacatttgggtccattatctgttacatccattcatggccattaatatt-ttttaaccattgtcgatgatcatagtaggttt |
222 |
Q |
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| T |
28939367 |
ttttgagcttttacattttgacatttgggtcaattatttgttacatccatttatggccattaatatttttttaaccattatcgatgatcatagtaggttt |
28939268 |
T |
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| Q |
223 |
ctatggatcatcttacttaaatcca |
247 |
Q |
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| T |
28939267 |
ctatggatcatcttacttaaatcca |
28939243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 56 - 247
Target Start/End: Complemental strand, 20699651 - 20699460
Alignment:
| Q |
56 |
gatatatgtcattttgctaagcagaaacatttaccttttcaatctagtatttcacatgctttttcaaattttgagcttttacattttaacatttgg-gtc |
154 |
Q |
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| T |
20699651 |
gatatatgtcattgtg-taaatagaaacatctaccttttcaatctagtatttcacatgcttcttcaaattttaagcttttacatcttgacatatagagtc |
20699553 |
T |
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| Q |
155 |
cattatctgttacatccattcatggccattaatattttttaaccattgtcgatgatcatagtaggtttctatggatcatcttacttaaatcca |
247 |
Q |
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| T |
20699552 |
cattatctgttacatccattcatagtcataaatactttttaaccattgtagatgatcatagtaggtttctatggatcatcttactgaaatcca |
20699460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 160 - 243
Target Start/End: Complemental strand, 34891165 - 34891082
Alignment:
| Q |
160 |
tctgttacatccattcatggccattaatattttttaaccattgtcgatgatcatagtaggtttctatggatcatcttacttaaa |
243 |
Q |
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| T |
34891165 |
tctgtttcatctgttcatggccacaagtattttttaaccattgttgatgatcatagtagatttctatggattattttgcttaaa |
34891082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 22643243 - 22643297
Alignment:
| Q |
62 |
tgtcattttgctaagcagaaacatttaccttttcaatctagtatttcacatgctt |
116 |
Q |
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| T |
22643243 |
tgtcattatgctaaacataaacatttacctttttcatctagtatttctcatgctt |
22643297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 133
Target Start/End: Original strand, 11924162 - 11924231
Alignment:
| Q |
64 |
tcattttgctaagcagaaacatttaccttttcaatctagtatttcacatgctttttcaaattttgagctt |
133 |
Q |
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| T |
11924162 |
tcattttgctaagcataagcatttaccttttacttctagtctttcacatgcttctgtcaattttgagctt |
11924231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 242
Target Start/End: Complemental strand, 44667853 - 44667761
Alignment:
| Q |
150 |
gggtccattatctgttacatccattcatggccattaatattttttaaccattgtcgatgatcatagtaggtttctatggatcatcttacttaa |
242 |
Q |
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| T |
44667853 |
gggtcctttgtctgtaacttccatacatggacatagatatttccttaccactgttgatgatcatagcagattcctatggatcatcttacttaa |
44667761 |
T |
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