View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14246_low_11 (Length: 443)
Name: NF14246_low_11
Description: NF14246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14246_low_11 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 19 - 443
Target Start/End: Complemental strand, 36288267 - 36287843
Alignment:
| Q |
19 |
gtactccccatacaaggataattagaaatttacattagagtctagctgtgaactattatatcatatgcaaatgaagtgttaaaaatgaagctaaatctac |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36288267 |
gtactccccatacaaggataattagaaatttacattagagtctagctgtgaactatcatatcatatgcaaatgaagtgttaaaaatgaagctaaatctac |
36288168 |
T |
|
| Q |
119 |
aatctaccaaaatattgatcattttatggtttggatttctgaaagaataagaatcaccatgtcgtattatggttcagaggatatctcatgaatgtcattg |
218 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36288167 |
aatctaccaaaatatttatcattttatggtttggatttctgaaagaataagaatcaccatgtcgtattatggttcagaggatatctcatgaatgtcattg |
36288068 |
T |
|
| Q |
219 |
ccaaatgttgagggagtgctatatgtacggactcctgttgagccgtctgtttggcttgtgcttacactatgaccttccttgttttgatggatgtccctca |
318 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36288067 |
ccaaatgttgagggagtgctatatgtacgcactcctgttgagccgtctgtttggcttgtgcttacactatgaccttccttgttttgatggatgtccctca |
36287968 |
T |
|
| Q |
319 |
tggatttaaaccttaaatcttcacagaaagtattaccttctgggataacatctggaatgctcattcttccttcaagcatgtttacaacctcagacatagt |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36287967 |
tggatttaaaccttaaatcttcacagaaagtattaccttctgggataacatctggaatgctcattcttccttcaagcatgtttacaacctcagacatagt |
36287868 |
T |
|
| Q |
419 |
aggcctaagtgatggtgatggattc |
443 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
36287867 |
aggcctaagtgatggtgatggattc |
36287843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University