View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14246_low_12 (Length: 403)
Name: NF14246_low_12
Description: NF14246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14246_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 24509385 - 24509776
Alignment:
| Q |
1 |
caaaaatttgaacaccacttcctctgattctactatttcttctgaccaaggaaatgctgggaaatcggtcttgtcaaatctgaattttattttatattca |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24509385 |
caaaaatttgaacaccacttcctccgattctactatttcttctgaccaaggaaatgctgggaaatcggtcttgtcaaatctgaattttattttatattca |
24509484 |
T |
|
| Q |
101 |
catttgaatgtgttttcctttttgatatcagttatggcaatacttatcatgactccgtggggggccgtaggcggtactctggtgttcggtccggtggttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24509485 |
catttgaatgtgttttcctttttgatatcagttatggcaatacttatcatgactccgtggggggccgtaggcggtactctggtgttcggtccggtggttt |
24509584 |
T |
|
| Q |
201 |
ggttcgcccttagttatatgtatgctatggcggtcatatcccctgcacctttcagtcccttaattcatatcctcatatcatctttaattgggttatctat |
300 |
Q |
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|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24509585 |
ggtttgcccttagttatatgtatgctatgacggtcatatcccctgcacctttcagtcccttaattcatatcctcatatcatctttaattgggttatctat |
24509684 |
T |
|
| Q |
301 |
attttatgtgttaattttaaacattattaatctttaccgtaatcgtcagctgcagctgatagtagatcagcatggtcactagatagatgatg |
392 |
Q |
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||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24509685 |
attctatgtgttaattttaaacattattaaactttaccgtaatcgtcagctgcagctgatagtagatcagcatggtcactagatagatgatg |
24509776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 29552849 - 29552921
Alignment:
| Q |
1 |
caaaaatttgaacaccacttcctctgattctactatttcttctgaccaaggaaatgctgggaaatcggtcttgtca |
76 |
Q |
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|||||||||||||| ||||||||| |||||||||||||| | || |||||||||||| ||||||||| ||||| |
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| T |
29552849 |
caaaaatttgaacatcacttcctccaattctactatttctac---cctaggaaatgctggaaaatcggtcatgtca |
29552921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 26086434 - 26086365
Alignment:
| Q |
7 |
tttgaacaccacttcctctgattctactatttcttctgaccaaggaaatgctgggaaatcggtcttgtca |
76 |
Q |
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|||||||| ||||||||| |||||||||||||| | ||||||||||| ||||||||| ||||||||| |
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| T |
26086434 |
tttgaacatcacttcctccaattctactatttctagtacccaaggaaatgttgggaaatctgtcttgtca |
26086365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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