View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14246_low_14 (Length: 374)
Name: NF14246_low_14
Description: NF14246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14246_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 39369304 - 39369684
Alignment:
| Q |
1 |
tcatccacttcttctgacaaagcgtgcagctgaggatgtgttgaacgggatggactcaatgctcaagccaaacgaggttaatgttgcagagatattggtg |
100 |
Q |
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| T |
39369304 |
tcatccacttcttctgacaaagcgtgcagctgaggatgtgttgaacgggatggactcaatgctcaagccaaacgaggttaatgttgcagagatattggtg |
39369403 |
T |
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| Q |
101 |
aagcatataacggatgttgtaaaaacatatacgtttaaagatgagaacgatgtaccatgcaaaatatcttttatcatgtcattattggtaagcgctgatg |
200 |
Q |
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| T |
39369404 |
aagcatataacggatgttgttaaaacatatacgtttaaagatgagaacgatgtaccatgcaaaatatcttttatcatgtcattattggtaagcgctgatg |
39369503 |
T |
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| Q |
201 |
tcatgtaggtgcaatatatgctgttagttacttgctgcataacattatagtcagtgttattttctgtagggtaatttgatcgctgaagggca-------- |
292 |
Q |
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| T |
39369504 |
tcatgtaggtgcaatatatgctgttagttacttgttgcataacattatagtcagtgttattttctgtagggtaatttgatcgctgaagggcatagggtac |
39369603 |
T |
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| Q |
293 |
---------ctcagactcggatgatgcttaattttattcaggtcagttcagaaataacttctatttgtattttacaatata |
364 |
Q |
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| T |
39369604 |
ttatcttttctcagactcggatgatgcttaattttattcaggtcagttcagaaataacttctatttgtattttacaatata |
39369684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 39355121 - 39355414
Alignment:
| Q |
1 |
tcatccacttcttctgacaaagcgtgcagctgaggatgtgttgaacgggatggactcaatgctcaagccaaacgaggttaatgttgcagagatattggtg |
100 |
Q |
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|||||| ||||| |||| ||||| || || |||||||| ||| | ||| |||| |||||||| |||||| | |||||||||||||| || | ||| | | |
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| T |
39355121 |
tcatccgcttctgttgactaagcgggctgcggaggatgtattggatgggttggaatcaatgctaaagccagaggaggttaatgttgcggaaaaattagcg |
39355220 |
T |
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| Q |
101 |
aagcatataacggatgttgtaaaaacatatacgtttaaagatgagaacgatgtaccatgcaaaatatcttttatcatgtcattattggtaagcgctgatg |
200 |
Q |
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| ||||||| | ||||||| | ||||| ||| |||| |||| || | |||||| ||||||||||| ||| |||||||||||||||||||| || |||| |
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| T |
39355221 |
atgcatatagcagatgttgcagaaacagataagtttgaagacaagcatgatgtatcatgcaaaatagttttcatcatgtcattattggtaagtgccgatg |
39355320 |
T |
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| Q |
201 |
tcatgtaggtgcaatatatgctgttag-ttacttg-ctgcataacattatagtcagtgttattttctgtagggtaatttgatcgctgaagggca |
292 |
Q |
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| T |
39355321 |
tcatgtgcatgcaatatatcgtcatagtttacatgtttgcttaaaattatagtcagtgtcatctgctgtaggataatttgatccctgaagggca |
39355414 |
T |
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