View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14246_low_15 (Length: 368)

Name: NF14246_low_15
Description: NF14246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14246_low_15
NF14246_low_15
[»] scaffold1416 (1 HSPs)
scaffold1416 (7-43)||(1718-1754)
[»] scaffold0164 (1 HSPs)
scaffold0164 (93-197)||(27448-27552)
[»] chr8 (1 HSPs)
chr8 (93-197)||(15192802-15192906)
[»] chr3 (3 HSPs)
chr3 (93-197)||(53977820-53977924)
chr3 (9-43)||(8835803-8835837)
chr3 (9-43)||(55309738-55309772)
[»] chr2 (3 HSPs)
chr2 (93-338)||(20043036-20043287)
chr2 (9-43)||(13130374-13130408)
chr2 (9-43)||(20484142-20484176)
[»] chr1 (2 HSPs)
chr1 (93-197)||(49641375-49641479)
chr1 (180-292)||(9797326-9797444)
[»] chr5 (2 HSPs)
chr5 (9-43)||(16991307-16991341)
chr5 (9-43)||(26471706-26471740)
[»] chr4 (2 HSPs)
chr4 (9-43)||(14036653-14036687)
chr4 (93-197)||(18253680-18253784)


Alignment Details
Target: scaffold1416 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1416
Description:

Target: scaffold1416; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 1754 - 1718
Alignment:
Q  7 ttgcacttcagattaggacatttgtctaatcaaagat 43  Q
    |||||||| ||||||||||||||||||||||||||||    
T  1754 ttgcactttagattaggacatttgtctaatcaaagat 1718  T

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Target: scaffold0164 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 197
Target Start/End: Complemental strand, 27552 - 27448
Alignment:
Q  93 tgtgatatttgtcactattctagacatatgaagttaccttttcaggttaatagtaataaagctagttaatgttatgaactgttccattttgatatttggg 192  Q
    |||||||| |||||||||||||||||||  ||| | |||||| || | | ||  |||||||||||| | |||||||| ||  | ||||||||||| ||||    
T  27552 tgtgatatctgtcactattctagacataaaaagcttccttttaagctcagtatgaataaagctagtcattgttatgagctaattcattttgatatatggg 27453  T
Q  193 gtcct 197  Q
    |||||    
T  27452 gtcct 27448  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 197
Target Start/End: Original strand, 15192802 - 15192906
Alignment:
Q  93 tgtgatatttgtcactattctagacatatgaagttaccttttcaggttaatagtaataaagctagttaatgttatgaactgttccattttgatatttggg 192  Q
    |||||||| |||||||||||||||||||  ||| | |||||| || | | ||  |||||||||||| | |||||||| ||  | ||||||||||| ||||    
T  15192802 tgtgatatctgtcactattctagacataaaaagcttccttttaagctcagtatgaataaagctagtcattgttatgagctaattcattttgatatatggg 15192901  T
Q  193 gtcct 197  Q
    |||||    
T  15192902 gtcct 15192906  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 197
Target Start/End: Original strand, 53977820 - 53977924
Alignment:
Q  93 tgtgatatttgtcactattctagacatatgaagttaccttttcaggttaatagtaataaagctagttaatgttatgaactgttccattttgatatttggg 192  Q
    |||||||| |||||||||||||||||||  ||| | |||||| || | | ||  |||||||||||| | |||||||| ||  | ||||||||||| ||||    
T  53977820 tgtgatatctgtcactattctagacataaaaagcttccttttaagctcagtatgaataaagctagtcattgttatgagctaattcattttgatatatggg 53977919  T
Q  193 gtcct 197  Q
    |||||    
T  53977920 gtcct 53977924  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 8835803 - 8835837
Alignment:
Q  9 gcacttcagattaggacatttgtctaatcaaagat 43  Q
    |||||| ||||||||||||||||||||||||||||    
T  8835803 gcactttagattaggacatttgtctaatcaaagat 8835837  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 55309738 - 55309772
Alignment:
Q  9 gcacttcagattaggacatttgtctaatcaaagat 43  Q
    |||||| ||||||||||||||||||||||||||||    
T  55309738 gcactttagattaggacatttgtctaatcaaagat 55309772  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 338
Target Start/End: Complemental strand, 20043287 - 20043036
Alignment:
Q  93 tgtgatatttgtcactattctagacatatgaagttaccttttcaggttaatagtaataaagctagttaatgttatgaactgttccattttgatatttggg 192  Q
    ||||| || ||||| ||||| |||||||  ||||||||||||||| ||| ||  |||| ||||    ||||||||||| |||| || |||||||| ||||    
T  20043287 tgtgacatatgtcattattccagacataaaaagttaccttttcagcttagtacaaatagagcttccaaatgttatgaattgtttcactttgatatatggg 20043188  T
Q  193 gtcctctctttattcaatctattcataag------tattttgtcacaactcttgatgatcataatcgttttacctagattatgctttgcaaatctaaata 286  Q
    ||||  | |  |  ||||||||||||||       |||||||| ||  |||||||||||  || | | ||||| | |||||| ||||| ||||||||||     
T  20043187 gtcccttttccacccaatctattcataatcaaagatattttgttactgctcttgatgattttagtagatttacttggattattctttgtaaatctaaatc 20043088  T
Q  287 tgaagttcaagattatgtgcaaaaatgtatccttatgataggaaatcaatat 338  Q
     ||||||||| || |||| || ||||  || |||||||||| ||||||||||    
T  20043087 agaagttcaaaatcatgttcagaaattcattcttatgatagaaaatcaatat 20043036  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 13130374 - 13130408
Alignment:
Q  9 gcacttcagattaggacatttgtctaatcaaagat 43  Q
    |||||| ||||||||||||||||||||||||||||    
T  13130374 gcactttagattaggacatttgtctaatcaaagat 13130408  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 20484176 - 20484142
Alignment:
Q  9 gcacttcagattaggacatttgtctaatcaaagat 43  Q
    |||||| ||||||||||||||||||||||||||||    
T  20484176 gcactttagattaggacatttgtctaatcaaagat 20484142  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 197
Target Start/End: Complemental strand, 49641479 - 49641375
Alignment:
Q  93 tgtgatatttgtcactattctagacatatgaagttaccttttcaggttaatagtaataaagctagttaatgttatgaactgttccattttgatatttggg 192  Q
    |||||||| |||||||||||||||||||  ||| | |||||| || | | ||  |||||||||||| | |||||||| ||  | ||||||||||| ||||    
T  49641479 tgtgatatctgtcactattctagacataaaaagcttccttttaagctcagtatgaataaagctagtcattgttatgagctaattcattttgatatatggg 49641380  T
Q  193 gtcct 197  Q
    |||||    
T  49641379 gtcct 49641375  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 292
Target Start/End: Complemental strand, 9797444 - 9797326
Alignment:
Q  180 tttgatatttggggtcctctctttattcaatctattc------ataagtattttgtcacaactcttgatgatcataatcgttttacctagattatgcttt 273  Q
    |||||||||||||||||||| | ||||||||||||||      |||| |||||  | ||  |||||||||||  |||||||||||| | ||| || ||||    
T  9797444 tttgatatttggggtcctctttctattcaatctattcatggttataaatatttcattactgctcttgatgattttaatcgttttacttggatcatacttt 9797345  T
Q  274 gcaaatctaaatatgaagt 292  Q
    | |||||||||| ||||||    
T  9797344 gtaaatctaaatctgaagt 9797326  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 16991341 - 16991307
Alignment:
Q  9 gcacttcagattaggacatttgtctaatcaaagat 43  Q
    |||||| ||||||||||||||||||||||||||||    
T  16991341 gcactttagattaggacatttgtctaatcaaagat 16991307  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 26471706 - 26471740
Alignment:
Q  9 gcacttcagattaggacatttgtctaatcaaagat 43  Q
    |||||| ||||||||||||||||||||||||||||    
T  26471706 gcactttagattaggacatttgtctaatcaaagat 26471740  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 14036653 - 14036687
Alignment:
Q  9 gcacttcagattaggacatttgtctaatcaaagat 43  Q
    |||||| ||||||||||||||||||||||||||||    
T  14036653 gcactttagattaggacatttgtctaatcaaagat 14036687  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 197
Target Start/End: Original strand, 18253680 - 18253784
Alignment:
Q  93 tgtgatatttgtcactattctagacatatgaagttaccttttcaggttaatagtaataaagctagttaatgttatgaactgttccattttgatatttggg 192  Q
    |||||||| ||||| |||||||||||||  ||| | |||||| || | | ||  |||||||||||| | |||||||| ||  | ||||||||||| ||||    
T  18253680 tgtgatatctgtcattattctagacataaaaagcttccttttaagctcagtatgaataaagctagtcattgttatgagctaattcattttgatatatggg 18253779  T
Q  193 gtcct 197  Q
    |||||    
T  18253780 gtcct 18253784  T

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