View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14246_low_18 (Length: 279)
Name: NF14246_low_18
Description: NF14246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14246_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 2 - 257
Target Start/End: Complemental strand, 12711237 - 12710982
Alignment:
| Q |
2 |
ttttcttcaaagatccttctaataatttttgcctttagtttcatcacacactgtatccaagcagctgaaagaccataccaacaagcaaacacattattca |
101 |
Q |
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| T |
12711237 |
ttttcttcaaagatgcttctaataatttttgcctttagtttcattacacactttatccaagcaattgaaagaccataccaacaagcaaacacattattca |
12711138 |
T |
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| Q |
102 |
ttaaaaattcttgcagctccacaacttatccaagactatgctacacctccctagtgaagcacgccgattccattcaaacaaatcgcgtgcttttaacatt |
201 |
Q |
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| T |
12711137 |
ttaaaaattcttgcagctctacaacttatccaagactatgctacacctccctagtgaagcacgctgattccattcaaacgaatcacgtgcttttaacatg |
12711038 |
T |
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| Q |
202 |
tacggccctaaacgtgactcttgcgtccgcgaaatcaacatcggctgtgatatcaa |
257 |
Q |
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| T |
12711037 |
tacggccctaaacgtgactcttgcgtccgcgaaatcaacatcggctatgatatcaa |
12710982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 2 - 257
Target Start/End: Complemental strand, 12685118 - 12684863
Alignment:
| Q |
2 |
ttttcttcaaagatccttctaataatttttgcctttagtttcatcacacactgtatccaagcagctgaaagaccataccaacaagcaaacacattattca |
101 |
Q |
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| T |
12685118 |
ttttcttcaaagatccttctaataattttttcctttagtttcatcacacactctatccaagcaaatgacagaccataccaacaatccaacaccttattca |
12685019 |
T |
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| Q |
102 |
ttaaaaattcttgcagctccacaacttatccaagactatgctacacctccctagtgaagcacgccgattccattcaaacaaatcgcgtgcttttaacatt |
201 |
Q |
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| T |
12685018 |
ttagaaattcttgtagttccacaacttacccaagactatgctacacatccctagtgaagcatgccgatttcatacaaacaaatcgcatgcttttaacagg |
12684919 |
T |
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| Q |
202 |
tacggccctaaacgtgactcttgcgtccgcgaaatcaacatcggctgtgatatcaa |
257 |
Q |
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| T |
12684918 |
aacggccctcaacgtgactcttgcatcggcaaaatcaacctcggctttgatgtcaa |
12684863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 12696619 - 12696363
Alignment:
| Q |
1 |
cttttcttcaaagatccttctaataatttttgcctttagtttcatcacacactgtatccaagcagctgaaagaccataccaacaagcaaacacattattc |
100 |
Q |
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||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| | ||||| |||||| |
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| T |
12696619 |
cttttcttcaaggatccttctaacaatttttgcctttagtttcatcacacactctatccaagcaaatgaaagaccataccaacaatccaacaccttattc |
12696520 |
T |
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| Q |
101 |
attaaaaattcttgcagctccacaacttatccaagactatgctacacctccctagtgaagcacgccgattccattcaaacaaatcgcgtgcttttaacat |
200 |
Q |
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| T |
12696519 |
attagaaattcttgtagttccacaacttacccaagactatgctacacatccctagtgaagcatgccgatttcatacaaacaaatcaaatgcttttaacag |
12696420 |
T |
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| Q |
201 |
ttacggccctaaacgtgactcttgcgtccgcgaaatcaacatcggctgtgatatcaa |
257 |
Q |
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|||||||| |||||||||||||| || || |||||||| |||||| |||| |||| |
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| T |
12696419 |
gaacggccctcaacgtgactcttgcatcggcaaaatcaacctcggctttgatgtcaa |
12696363 |
T |
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