View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14246_low_22 (Length: 241)

Name: NF14246_low_22
Description: NF14246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14246_low_22
NF14246_low_22
[»] chr2 (7 HSPs)
chr2 (1-235)||(35226081-35226321)
chr2 (164-224)||(38799751-38799811)
chr2 (164-214)||(27591182-27591231)
chr2 (190-235)||(25412031-25412076)
chr2 (8-65)||(42065848-42065905)
chr2 (167-199)||(40302942-40302974)
chr2 (164-196)||(44104064-44104096)
[»] chr3 (9 HSPs)
chr3 (191-235)||(52085001-52085045)
chr3 (182-235)||(20846053-20846106)
chr3 (166-235)||(23884580-23884649)
chr3 (20-64)||(2699586-2699630)
chr3 (10-57)||(21587074-21587121)
chr3 (167-197)||(15663750-15663780)
chr3 (164-214)||(37681432-37681482)
chr3 (166-199)||(7137377-7137410)
chr3 (164-197)||(38869977-38870010)
[»] chr1 (10 HSPs)
chr1 (100-208)||(42561586-42561699)
chr1 (164-235)||(15883326-15883397)
chr1 (164-221)||(40368105-40368162)
chr1 (20-65)||(42561733-42561778)
chr1 (182-235)||(49840395-49840448)
chr1 (164-235)||(15881422-15881493)
chr1 (165-211)||(32409154-32409200)
chr1 (164-214)||(35056129-35056179)
chr1 (164-193)||(34342392-34342421)
chr1 (164-197)||(43020830-43020863)
[»] chr5 (9 HSPs)
chr5 (164-225)||(6229164-6229225)
chr5 (7-46)||(1592015-1592054)
chr5 (14-61)||(22872397-22872444)
chr5 (11-50)||(11487332-11487371)
chr5 (164-199)||(43008349-43008384)
chr5 (10-44)||(11487638-11487672)
chr5 (164-197)||(27175254-27175287)
chr5 (19-59)||(3165528-3165568)
chr5 (158-214)||(25537056-25537112)
[»] chr4 (9 HSPs)
chr4 (164-220)||(4379863-4379919)
chr4 (164-203)||(23424326-23424365)
chr4 (10-44)||(12291484-12291518)
chr4 (164-214)||(12294703-12294752)
chr4 (167-212)||(14065370-14065414)
chr4 (165-214)||(24636877-24636925)
chr4 (8-73)||(31445581-31445646)
chr4 (172-209)||(36198332-36198369)
chr4 (165-197)||(23981955-23981987)
[»] chr7 (15 HSPs)
chr7 (163-214)||(33797273-33797323)
chr7 (164-196)||(13703392-13703424)
chr7 (164-208)||(14625032-14625075)
chr7 (23-78)||(38636017-38636073)
chr7 (167-214)||(13703094-13703141)
chr7 (153-230)||(41750012-41750092)
chr7 (164-214)||(43140610-43140659)
chr7 (164-197)||(7806844-7806877)
chr7 (182-235)||(9817734-9817787)
chr7 (182-235)||(10719659-10719712)
chr7 (174-235)||(21305013-21305074)
chr7 (20-57)||(35071037-35071074)
chr7 (164-197)||(35093679-35093712)
chr7 (164-197)||(35096927-35096960)
chr7 (20-57)||(35097069-35097106)
[»] chr8 (10 HSPs)
chr8 (164-214)||(7975830-7975879)
chr8 (164-197)||(15899162-15899195)
chr8 (164-207)||(10867205-10867248)
chr8 (164-194)||(11876382-11876412)
chr8 (164-194)||(11891389-11891419)
chr8 (168-214)||(23038576-23038622)
chr8 (166-203)||(2442479-2442516)
chr8 (182-235)||(12542365-12542417)
chr8 (11-44)||(33300170-33300203)
chr8 (15-75)||(11911960-11912019)
[»] scaffold0009 (1 HSPs)
scaffold0009 (164-221)||(55373-55430)
[»] scaffold0001 (1 HSPs)
scaffold0001 (164-198)||(405558-405592)


Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 35226321 - 35226081
Alignment:
Q  1 caattcatatatctataccatatataaagaaaataggggattttaggctgactttttcattattcaagttatacctttgatcaannnnnnnnncct---- 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||        
T  35226321 caattcatatatctataccatatataaagaaaataggggattttaggctgactttttcattattcaagttatacctttgatcaattttttttctcttcta 35226222  T
Q  97 --atcatgttatattgtttgtttcattaaaaatataagattatattatatcttggatcgttggtgtttctgaaaaagataaatatgatttgttgagtttg 194  Q
      |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  35226221 taatcatgttgtattgttggtttcattaaaaatataagattatattatatcttggatcgttggtgtttctgaaaaagataaatatgatttgttgagttta 35226122  T
Q  195 ttataatttgaaattcacaagcatctaatctttatactttt 235  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  35226121 ttataatttgaaattcacaagcatctaatctttatactttt 35226081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 224
Target Start/End: Original strand, 38799751 - 38799811
Alignment:
Q  164 tgaaaaagataaatatgatttgttgagtttgttataatttgaaattcacaagcatctaatc 224  Q
    ||||||||||||| ||| ||| |||  ||||||||||||||||| |||||| |||||||||    
T  38799751 tgaaaaagataaacatggtttattggatttgttataatttgaaaatcacaaacatctaatc 38799811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 27591182 - 27591231
Alignment:
Q  164 tgaaaaagataaatatgatttgttgagtttgttataatttgaaattcacaa 214  Q
    |||||||||||||||||||||||||| |||||||  |||||||| ||||||    
T  27591182 tgaaaaagataaatatgatttgttgaatttgtta-catttgaaagtcacaa 27591231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 235
Target Start/End: Complemental strand, 25412076 - 25412031
Alignment:
Q  190 gtttgttataatttgaaattcacaagcatctaatctttatactttt 235  Q
    |||||||||||||| ||||||| || |||||||||| |||||||||    
T  25412076 gtttgttataatttaaaattcataaacatctaatctctatactttt 25412031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 42065905 - 42065848
Alignment:
Q  8 tatatctataccatatataaagaaaataggggattttaggctgactttttcattattc 65  Q
    ||||||||||| ||||||||||||||||   ||||||  |||||||||||||| ||||    
T  42065905 tatatctatactatatataaagaaaatatatgattttgagctgactttttcatcattc 42065848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 40302974 - 40302942
Alignment:
Q  167 aaaagataaatatgatttgttgagtttgttata 199  Q
    |||||||||||||| ||||||||||||||||||    
T  40302974 aaaagataaatatggtttgttgagtttgttata 40302942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 44104096 - 44104064
Alignment:
Q  164 tgaaaaagataaatatgatttgttgagtttgtt 196  Q
    ||||||||||||| |||||||||||||||||||    
T  44104096 tgaaaaagataaacatgatttgttgagtttgtt 44104064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 191 - 235
Target Start/End: Original strand, 52085001 - 52085045
Alignment:
Q  191 tttgttataatttgaaattcacaagcatctaatctttatactttt 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  52085001 tttgttataatttgaaattcacaagcatctaatctttatactttt 52085045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 182 - 235
Target Start/End: Original strand, 20846053 - 20846106
Alignment:
Q  182 tttgttgagtttgttataatttgaaattcacaagcatctaatctttatactttt 235  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||| ||||    
T  20846053 tttgttgagtttgttataatttgaaattcacaaatatctaatctttatattttt 20846106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 23884649 - 23884580
Alignment:
Q  166 aaaaagataaatatgatttgttgagtttgttataatttgaaattcacaagcatctaatctttatactttt 235  Q
    ||||||||||| |  ||||||||  ||||||||||||||||||||||||  ||||||||| |||| ||||    
T  23884649 aaaaagataaacacaatttgttggatttgttataatttgaaattcacaaatatctaatctctatattttt 23884580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 2699630 - 2699586
Alignment:
Q  20 atatataaagaaaataggggattttaggctgactttttcattatt 64  Q
    |||||||||||||||| || ||||| |||||||||||||||||||    
T  2699630 atatataaagaaaataaggcatttttggctgactttttcattatt 2699586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 21587121 - 21587074
Alignment:
Q  10 tatctataccatatataaagaaaataggggattttaggctgacttttt 57  Q
    ||||||||| |||| ||||| |||||||||||||| ||||||||||||    
T  21587121 tatctatactatatttaaaggaaataggggattttgggctgacttttt 21587074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 197
Target Start/End: Complemental strand, 15663780 - 15663750
Alignment:
Q  167 aaaagataaatatgatttgttgagtttgtta 197  Q
    |||||||||||||||||||||||||||||||    
T  15663780 aaaagataaatatgatttgttgagtttgtta 15663750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 37681432 - 37681482
Alignment:
Q  164 tgaaaaagataaatatgatttgttgagtttgttataatttgaaattcacaa 214  Q
    ||||||||||||| ||||||| ||| |||||||| ||||||||| ||||||    
T  37681432 tgaaaaagataaacatgattttttgggtttgttacaatttgaaagtcacaa 37681482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 199
Target Start/End: Complemental strand, 7137410 - 7137377
Alignment:
Q  166 aaaaagataaatatgatttgttgagtttgttata 199  Q
    ||||||||||||||| ||||||||||||||||||    
T  7137410 aaaaagataaatatggtttgttgagtttgttata 7137377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 38869977 - 38870010
Alignment:
Q  164 tgaaaaagataaatatgatttgttgagtttgtta 197  Q
    ||||||||||||||||||||| ||||||||||||    
T  38869977 tgaaaaagataaatatgatttattgagtttgtta 38870010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 100 - 208
Target Start/End: Complemental strand, 42561699 - 42561586
Alignment:
Q  100 atgttatattgtttgtttcattaaaaat-ataaga--ttatattata--tcttggatcgttggtgtttctgaaaaagataaatatgatttgttgagtttg 194  Q
    ||||||||||||| |||||||||||||  ||||||  ||||||||||  | || |||||||||||||| ||||||| ||||| ||| |||||| ||||||    
T  42561699 atgttatattgttggtttcattaaaaagcataagaaattatattatacttgttagatcgttggtgtttttgaaaaaaataaacatggtttgttaagtttg 42561600  T
Q  195 ttataatttgaaat 208  Q
    ||||||||| ||||    
T  42561599 ttataatttaaaat 42561586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 164 - 235
Target Start/End: Original strand, 15883326 - 15883397
Alignment:
Q  164 tgaaaaagataaatatgatttgttgagtttgttataatttgaaattcacaagcatctaatctttatactttt 235  Q
    |||||| |||||||||  |||||| ||||| |||||||||||||||||||| |||||||| || ||||||||    
T  15883326 tgaaaaggataaatatagtttgttaagtttattataatttgaaattcacaaacatctaatattaatactttt 15883397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 40368105 - 40368162
Alignment:
Q  164 tgaaaaagataaatatgatttgttgagtttgttataatttgaaattcacaagcatcta 221  Q
    ||||||||||||| ||| ||||||| |||||||||||||||||| |||||| ||||||    
T  40368105 tgaaaaagataaacatggtttgttgggtttgttataatttgaaagtcacaaacatcta 40368162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 42561778 - 42561733
Alignment:
Q  20 atatataaagaaaataggggattttaggctgactttttcattattc 65  Q
    |||||||||||||||| | |||||| ||||||||||||||||||||    
T  42561778 atatataaagaaaataagagattttgggctgactttttcattattc 42561733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 235
Target Start/End: Complemental strand, 49840448 - 49840395
Alignment:
Q  182 tttgttgagtttgttataatttgaaattcacaagcatctaatctttatactttt 235  Q
    ||||||| ||||||||||||||||||| ||||| |||||||||| | |||||||    
T  49840448 tttgttgggtttgttataatttgaaatccacaaacatctaatctatgtactttt 49840395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 235
Target Start/End: Original strand, 15881422 - 15881493
Alignment:
Q  164 tgaaaaagataaatatgatttgttgagtttgttataatttgaaattcacaagcatctaatctttatactttt 235  Q
    |||||| |||||||||  |||||| ||||| |||||||||||||||||||  ||  |||| |||||||||||    
T  15881422 tgaaaaggataaatattgtttgttaagtttcttataatttgaaattcacagacaattaatatttatactttt 15881493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 211
Target Start/End: Complemental strand, 32409200 - 32409154
Alignment:
Q  165 gaaaaagataaatatgatttgttgagtttgttataatttgaaattca 211  Q
    ||||| ||||||||||||||||||  ||||||||||||| |||||||    
T  32409200 gaaaaggataaatatgatttgttggatttgttataatttaaaattca 32409154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 35056179 - 35056129
Alignment:
Q  164 tgaaaaagataaatatgatttgttgagtttgttataatttgaaattcacaa 214  Q
    ||||||||||||| ||||||||||| ||||  |||||||||||| ||||||    
T  35056179 tgaaaaagataaacatgatttgttgggtttaatataatttgaaagtcacaa 35056129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 193
Target Start/End: Original strand, 34342392 - 34342421
Alignment:
Q  164 tgaaaaagataaatatgatttgttgagttt 193  Q
    ||||||||||||||||||||||||||||||    
T  34342392 tgaaaaagataaatatgatttgttgagttt 34342421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 43020830 - 43020863
Alignment:
Q  164 tgaaaaagataaatatgatttgttgagtttgtta 197  Q
    ||||||||||||||||| ||||||||||||||||    
T  43020830 tgaaaaagataaatatggtttgttgagtttgtta 43020863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 225
Target Start/End: Original strand, 6229164 - 6229225
Alignment:
Q  164 tgaaaaagataaatatgatttgttgagtttgttataatttgaaattcacaagcatctaatct 225  Q
    ||||||| |||||||| ||||||||||||||||||| ||||||||||  || ||||||||||    
T  6229164 tgaaaaaaataaatataatttgttgagtttgttatactttgaaattcttaaacatctaatct 6229225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 1592015 - 1592054
Alignment:
Q  7 atatatctataccatatataaagaaaataggggattttag 46  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  1592015 atatatctatactatatataaagaaaataggggattttag 1592054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 22872444 - 22872397
Alignment:
Q  14 tataccatatataaagaaaataggggattttaggctgactttttcatt 61  Q
    ||||| ||||||||||||||||| ||||||||||||| ||||||||||    
T  22872444 tatactatatataaagaaaatagaggattttaggctgtctttttcatt 22872397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 11487371 - 11487332
Alignment:
Q  11 atctataccatatataaagaaaataggggattttaggctg 50  Q
    |||||||| ||||||||||||||||||||||||| |||||    
T  11487371 atctatactatatataaagaaaataggggattttgggctg 11487332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 199
Target Start/End: Complemental strand, 43008384 - 43008349
Alignment:
Q  164 tgaaaaagataaatatgatttgttgagtttgttata 199  Q
    |||||||||||||||||||||||| |||||||||||    
T  43008384 tgaaaaagataaatatgatttgttaagtttgttata 43008349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 44
Target Start/End: Complemental strand, 11487672 - 11487638
Alignment:
Q  10 tatctataccatatataaagaaaataggggatttt 44  Q
    ||||||||| |||||||||||||||||||||||||    
T  11487672 tatctatactatatataaagaaaataggggatttt 11487638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 27175254 - 27175287
Alignment:
Q  164 tgaaaaagataaatatgatttgttgagtttgtta 197  Q
    ||||||||||||||||| ||||||||||||||||    
T  27175254 tgaaaaagataaatatggtttgttgagtttgtta 27175287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 3165528 - 3165568
Alignment:
Q  19 catatataaagaaaataggggattttaggctgactttttca 59  Q
    ||||||||||||||||| | ||||||||| |||||||||||    
T  3165528 catatataaagaaaatatgagattttaggatgactttttca 3165568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 25537056 - 25537112
Alignment:
Q  158 tgtttctgaaaaagataaatatgatttgttgagtttgttataatttgaaattcacaa 214  Q
    |||| |||||||||||||| ||| ||| ||| |||||||| ||||||||| ||||||    
T  25537056 tgttactgaaaaagataaacatggttttttgggtttgttacaatttgaaagtcacaa 25537112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 164 - 220
Target Start/End: Complemental strand, 4379919 - 4379863
Alignment:
Q  164 tgaaaaagataaatatgatttgttgagtttgttataatttgaaattcacaagcatct 220  Q
    ||||||||||||| |||||||||| ||||||||||||||| |||| ||||| |||||    
T  4379919 tgaaaaagataaacatgatttgttaagtttgttataatttaaaatgcacaaacatct 4379863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 203
Target Start/End: Complemental strand, 23424365 - 23424326
Alignment:
Q  164 tgaaaaagataaatatgatttgttgagtttgttataattt 203  Q
    |||||| ||||||||||||||||||||||||||| |||||    
T  23424365 tgaaaatgataaatatgatttgttgagtttgttacaattt 23424326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 44
Target Start/End: Complemental strand, 12291518 - 12291484
Alignment:
Q  10 tatctataccatatataaagaaaataggggatttt 44  Q
    ||||||||| |||||||||||||||||||||||||    
T  12291518 tatctatactatatataaagaaaataggggatttt 12291484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 12294703 - 12294752
Alignment:
Q  164 tgaaaaagataaatatgatttgttgagtttgttataatttgaaattcacaa 214  Q
    ||||||| ||||||||| ||||||||||||||||  |||||||||||||||    
T  12294703 tgaaaaatataaatatggtttgttgagtttgtta-catttgaaattcacaa 12294752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 14065370 - 14065414
Alignment:
Q  167 aaaagataaatatgatttgttgagtttgttataatttgaaattcac 212  Q
    ||||||||||| |||||||||||||||||||| |||||||| ||||    
T  14065370 aaaagataaatctgatttgttgagtttgttat-atttgaaaatcac 14065414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 214
Target Start/End: Original strand, 24636877 - 24636925
Alignment:
Q  165 gaaaaagataaatatgatttgttgagtttgttataatttgaaattcacaa 214  Q
    |||||||||||||||| ||||||||||||||||  |||||||| ||||||    
T  24636877 gaaaaagataaatatggtttgttgagtttgtta-catttgaaagtcacaa 24636925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 31445646 - 31445581
Alignment:
Q  8 tatatctataccatatataaagaaaataggggattttaggctgactttttcattattcaagttata 73  Q
    ||||| ||||| |||||||||||| ||| |||||||| |  ||||||||||||||| ||| |||||    
T  31445646 tatatttatactatatataaagaagataagggattttcgaatgactttttcattatccaaattata 31445581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 209
Target Start/End: Original strand, 36198332 - 36198369
Alignment:
Q  172 ataaatatgatttgttgagtttgttataatttgaaatt 209  Q
    |||||||||||| ||||| |||||||||||||||||||    
T  36198332 ataaatatgattggttgattttgttataatttgaaatt 36198369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 197
Target Start/End: Original strand, 23981955 - 23981987
Alignment:
Q  165 gaaaaagataaatatgatttgttgagtttgtta 197  Q
    |||||||||||||||| ||||||||||||||||    
T  23981955 gaaaaagataaatatggtttgttgagtttgtta 23981987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 214
Target Start/End: Original strand, 33797273 - 33797323
Alignment:
Q  163 ctgaaaaagataaatatgatttgttgagtttgttataatttgaaattcacaa 214  Q
    |||||||||||||||||||||||||||||||||||  |||||||| ||||||    
T  33797273 ctgaaaaagataaatatgatttgttgagtttgtta-catttgaaaatcacaa 33797323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 13703392 - 13703424
Alignment:
Q  164 tgaaaaagataaatatgatttgttgagtttgtt 196  Q
    |||||||||||||||||||||||||||||||||    
T  13703392 tgaaaaagataaatatgatttgttgagtttgtt 13703424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 14625075 - 14625032
Alignment:
Q  164 tgaaaaagataaatatgatttgttgagtttgttataatttgaaat 208  Q
    |||||||||| |||||||||||||||||||||||| |||||||||    
T  14625075 tgaaaaagattaatatgatttgttgagtttgttat-atttgaaat 14625032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 38636073 - 38636017
Alignment:
Q  23 tataaagaaaatagg-ggattttaggctgactttttcattattcaagttataccttt 78  Q
    ||||||||||||||| ||||||||||||||||||||  |||||| | ||||||||||    
T  38636073 tataaagaaaataggaggattttaggctgacttttttgttattccaattataccttt 38636017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 214
Target Start/End: Original strand, 13703094 - 13703141
Alignment:
Q  167 aaaagataaatatgatttgttgagtttgttataatttgaaattcacaa 214  Q
    |||||||||||||| |||||||||||||||| ||||| ||| ||||||    
T  13703094 aaaagataaatatggtttgttgagtttgttacaatttaaaagtcacaa 13703141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 230
Target Start/End: Complemental strand, 41750092 - 41750012
Alignment:
Q  153 gttggtgtttctgaaaaagataaatatgatttgttgagtttgtta---taatttgaaattcacaagcatctaatctttata 230  Q
    |||| ||||| ||||||||||||| ||||||| ||||| ||||||   |||||| |||||||||| ||| || ||||||||    
T  41750092 gttgttgtttttgaaaaagataaacatgattttttgagcttgttatattaatttaaaattcacaaacatttagtctttata 41750012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 43140610 - 43140659
Alignment:
Q  164 tgaaaaagataaatatgatttgttgagtttgttataatttgaaattcacaa 214  Q
    ||||||||||||||||||||||| ||||||||||  |||||||| ||||||    
T  43140610 tgaaaaagataaatatgatttgtggagtttgtta-catttgaaaatcacaa 43140659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 7806844 - 7806877
Alignment:
Q  164 tgaaaaagataaatatgatttgttgagtttgtta 197  Q
    ||||||||||||||||| ||||||||||||||||    
T  7806844 tgaaaaagataaatatggtttgttgagtttgtta 7806877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 235
Target Start/End: Original strand, 9817734 - 9817787
Alignment:
Q  182 tttgttgagtttgttataatttgaaattcacaagcatctaatctttatactttt 235  Q
    |||||||  ||| |||||||||||||||||||| |||||||| | |||||||||    
T  9817734 tttgttggttttattataatttgaaattcacaaacatctaatttatatactttt 9817787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 235
Target Start/End: Original strand, 10719659 - 10719712
Alignment:
Q  182 tttgttgagtttgttataatttgaaattcacaagcatctaatctttatactttt 235  Q
    |||||||  ||| |||||||||||||||||||| |||||||| | |||||||||    
T  10719659 tttgttggttttattataatttgaaattcacaaacatctaatttatatactttt 10719712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 235
Target Start/End: Complemental strand, 21305074 - 21305013
Alignment:
Q  174 aaatatgatttgttgagtttgttataatttgaaattcacaagcatctaatctttatactttt 235  Q
    ||||||||||||||| |||||| |  |||| ||||| |||| ||||||||||||||| ||||    
T  21305074 aaatatgatttgttgggtttgtcactatttaaaattaacaaacatctaatctttataatttt 21305013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 35071074 - 35071037
Alignment:
Q  20 atatataaagaaaataggggattttaggctgacttttt 57  Q
    ||||||||||||||||||||||||| || |||||||||    
T  35071074 atatataaagaaaataggggattttgggttgacttttt 35071037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 197
Target Start/End: Complemental strand, 35093712 - 35093679
Alignment:
Q  164 tgaaaaagataaatatgatttgttgagtttgtta 197  Q
    ||||| ||||||||||||||||||||||||||||    
T  35093712 tgaaatagataaatatgatttgttgagtttgtta 35093679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 197
Target Start/End: Complemental strand, 35096960 - 35096927
Alignment:
Q  164 tgaaaaagataaatatgatttgttgagtttgtta 197  Q
    ||||| ||||||||||||||||||||||||||||    
T  35096960 tgaaatagataaatatgatttgttgagtttgtta 35096927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 35097106 - 35097069
Alignment:
Q  20 atatataaagaaaataggggattttaggctgacttttt 57  Q
    ||||||||||||||||||||||||| || |||||||||    
T  35097106 atatataaagaaaataggggattttgggttgacttttt 35097069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 7975879 - 7975830
Alignment:
Q  164 tgaaaaagataaatatgatttgttgagtttgttataatttgaaattcacaa 214  Q
    ||||||||||||||||| |||||||||||||||| ||||||||| ||||||    
T  7975879 tgaaaaagataaatatggtttgttgagtttgtta-aatttgaaaatcacaa 7975830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 15899162 - 15899195
Alignment:
Q  164 tgaaaaagataaatatgatttgttgagtttgtta 197  Q
    ||||||||||||||||||||||||||||||||||    
T  15899162 tgaaaaagataaatatgatttgttgagtttgtta 15899195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 207
Target Start/End: Complemental strand, 10867248 - 10867205
Alignment:
Q  164 tgaaaaagataaatatgatttgttgagtttgttataatttgaaa 207  Q
    ||||| ||||||||||||||||||| ||||||| ||||||||||    
T  10867248 tgaaatagataaatatgatttgttgggtttgttgtaatttgaaa 10867205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 194
Target Start/End: Complemental strand, 11876412 - 11876382
Alignment:
Q  164 tgaaaaagataaatatgatttgttgagtttg 194  Q
    |||||||||||||||||||||||||||||||    
T  11876412 tgaaaaagataaatatgatttgttgagtttg 11876382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 194
Target Start/End: Complemental strand, 11891419 - 11891389
Alignment:
Q  164 tgaaaaagataaatatgatttgttgagtttg 194  Q
    |||||||||||||||||||||||||||||||    
T  11891419 tgaaaaagataaatatgatttgttgagtttg 11891389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 214
Target Start/End: Original strand, 23038576 - 23038622
Alignment:
Q  168 aaagataaatatgatttgttgagtttgttataatttgaaattcacaa 214  Q
    ||||||||||| | |||||||||||||||| ||||||||| ||||||    
T  23038576 aaagataaatagggtttgttgagtttgttacaatttgaaagtcacaa 23038622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 203
Target Start/End: Original strand, 2442479 - 2442516
Alignment:
Q  166 aaaaagataaatatgatttgttgagtttgttataattt 203  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  2442479 aaaaagataaacatgatttgttgagtttgttacaattt 2442516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 235
Target Start/End: Original strand, 12542365 - 12542417
Alignment:
Q  182 tttgttgagtttgttataatttgaaattcacaagcatctaatctttatactttt 235  Q
    ||||||| ||||||||||| ||||||||||||| |||| ||||| |||||||||    
T  12542365 tttgttgggtttgttataacttgaaattcacaaacatc-aatctctatactttt 12542417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 33300203 - 33300170
Alignment:
Q  11 atctataccatatataaagaaaataggggatttt 44  Q
    |||||||| |||||||||||||||||||||||||    
T  33300203 atctatactatatataaagaaaataggggatttt 33300170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 11911960 - 11912019
Alignment:
Q  15 ataccatatataaagaaaataggggattttaggctgactttttcattattcaagttatacc 75  Q
    |||| ||||||||||||||||| | ||||| |||||||||||| ||||||| | |||||||    
T  11911960 atactatatataaagaaaatagagtattttgggctgacttttt-attattccaattatacc 11912019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 55373 - 55430
Alignment:
Q  164 tgaaaaagataaatatgatttgttgagtttgttataatttgaaattcacaagcatcta 221  Q
    ||||||||||||||||| ||| ||| |||||||||||| | ||| |||||||||||||    
T  55373 tgaaaaagataaatatggtttattgggtttgttataatataaaaatcacaagcatcta 55430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 198
Target Start/End: Original strand, 405558 - 405592
Alignment:
Q  164 tgaaaaagataaatatgatttgttgagtttgttat 198  Q
    |||||||||||||||| ||||||||||||||||||    
T  405558 tgaaaaagataaatattatttgttgagtttgttat 405592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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