View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14246_low_4 (Length: 505)
Name: NF14246_low_4
Description: NF14246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14246_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 1 - 487
Target Start/End: Complemental strand, 38188100 - 38187608
Alignment:
| Q |
1 |
gacttcgcaaaggttgagaagcgtgtgcgtacaacaggtggtgggagtagaggaactgtgaggtaatttttatgatgctgtcattgtaaaagtgcatagc |
100 |
Q |
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| T |
38188100 |
gacttcgcaaaggttgagaagcgtgtgcgtacaacaggtggtgggagtagaggaactgtgaggtaatttttatgatgctgtcattgtaaaagtgcatagc |
38188001 |
T |
|
| Q |
101 |
agagttgattggtaattatcacttctattatttttcttacgtggattgtaactgaaatatcttaatcttcaggaacctacgtatccgagaggatactgca |
200 |
Q |
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| T |
38188000 |
agagttgattggtaattatcacttctattatttttcttacgtggattgtaactgaaatatcttaatcttcaggaacctacgtatccgagaggatactgca |
38187901 |
T |
|
| Q |
201 |
aaatatcttctca------atgtcaattctgcacattatgaccccaagactaggtccatgcgtgaagatcctcttccagagtcagatccaaatgaaaagt |
294 |
Q |
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| T |
38187900 |
aaatatcttctcaatctcgatgtcaattctgcacattatgaccccaagactaggtccatgcgtgaagatcctcttccagagtcagatccaaatgaaaagt |
38187801 |
T |
|
| Q |
295 |
tttacttggtaacttagtcttaaggattannnnnnnnaaggaacttgatggtttgatttgttattgcttcttgcatgcttatcttgtatttgggttaaaa |
394 |
Q |
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| T |
38187800 |
tttacttggtaacttagtcttaaggattattttttttaaggaacttgatggtttgatttgttattgcttgttgcatgcttatcttgtatttgggttaaaa |
38187701 |
T |
|
| Q |
395 |
tctgtttgtgttctgtagggtgataaccattatagaaatagtggtcaagctttggaactcaaggaattaaacaactatgctcgggaagcattt |
487 |
Q |
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| T |
38187700 |
tctgtttgtgttctgtagggtgataaccattatagaaatagtggtcaagctttggaagtcaaggaattaaacaacaatgctcgggaagcattt |
38187608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 175; Significance: 5e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 7 - 487
Target Start/End: Original strand, 38922789 - 38923295
Alignment:
| Q |
7 |
gcaaaggttgagaagcgtgtgcgtacaacaggtggtgggagtagaggaactgtgaggtaatttttatgatgctgtcattgtaaaagtgcatagcagagtt |
106 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||| | |||| || |||| |
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| T |
38922789 |
gcaaaggttgagaagcgtgtgcgaacaacaggtggtgggagtacaggaactgtgaggtaatttttatgttgctctcattgtaataatgcagcgccaagtt |
38922888 |
T |
|
| Q |
107 |
gattggt------------aattatcacttctattatttttcttacgtggattgtaactgaaatat--cttaatcttcaggaacctacgtatccgagagg |
192 |
Q |
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|||||| |||||||| |||||| ||||||||||| || ||||||| |||||| ||||| |||||||||||||||||| ||||||| |
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| T |
38922889 |
tattggtccgttaaattacaattatcagttctataatttttcttacatgaattgtaatgtaaatatatcttaaccttcaggaacctacgtattcgagagg |
38922988 |
T |
|
| Q |
193 |
atactgcaaaatatcttctcaat------gtcaattctgcacattatgaccccaagactaggtccatgcgtgaagatcctcttccagagtcagatccaaa |
286 |
Q |
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| T |
38922989 |
atactgcaaaatatcttctcaatcttgatgtcaattctgcacattatgaccccaagaccaggtccatgcgtgaagatcctcttccagaggcagatccaaa |
38923088 |
T |
|
| Q |
287 |
tgaaaagttttacttggtaacttagtcttaaggattannnnnnnnaag-gaacttgatggtttgatttgttattgcttcttgcatgcttatc-ttgtatt |
384 |
Q |
| |
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| T |
38923089 |
tgaaaagttttacttggtaaact-gtctcgaagattaaatttatttagaaaacttgatgatttgattttttattgctt-ttgcgtgttaatctttgtatt |
38923186 |
T |
|
| Q |
385 |
tgggttaaaatctgtttgtgtt------ctgtagggtgataaccattatagaaatagtggtcaagctttggaactcaaggaattaaacaactatgctcgg |
478 |
Q |
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||||||||||| ||||| |||| |||||||||||||||| ||||||| ||||||||||||||||||| ||||||| ||||||| | |||| || |
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| T |
38923187 |
tgggttaaaatttgtttttgtttttgtcttgtagggtgataaccaatatagaagtagtggtcaagctttggaattcaaggacttaaacatccatgcctgg |
38923286 |
T |
|
| Q |
479 |
gaagcattt |
487 |
Q |
| |
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||||||||| |
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|
| T |
38923287 |
gaagcattt |
38923295 |
T |
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