View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14246_low_5 (Length: 489)
Name: NF14246_low_5
Description: NF14246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14246_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 160; Significance: 5e-85; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 13 - 176
Target Start/End: Complemental strand, 8641433 - 8641270
Alignment:
| Q |
13 |
aatatatttcatcacaccttccctagagagagatccttcttggtcatggttccctaaaacagccacccaaggaatgtttgattcaattgcaggagcaaat |
112 |
Q |
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| T |
8641433 |
aatatatttcatcacaccttccctagagagtgatccttcttggtcatggttccctaaaacagccacccaaggaatgtttgattcaattgcaggagcaaat |
8641334 |
T |
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| Q |
113 |
gcagcgtccatcgatttagccgaatccgaggaatcatgaccatagatgttatctcctgtcatac |
176 |
Q |
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| T |
8641333 |
gcagcgtccatcgatttagccgaatccgaggaatcatgaccatagatgttatctcctgtcatac |
8641270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 311 - 474
Target Start/End: Complemental strand, 8647444 - 8647281
Alignment:
| Q |
311 |
aataccagtgaagacaataagattaggcttctcagcaaggatcatcctatgaatgaaagcagtagtattgaggtcagtacaagaagccttctgagaagga |
410 |
Q |
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| T |
8647444 |
aataccagtgaagacaataagattaggcttctcagcaaggatcatcctatgaatgaaagcagtagtattgaggtcagtacaagaagccttctgagaagga |
8647345 |
T |
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| Q |
411 |
agtacatccaaacacagtgtattctttccatttgcatagtgcatatctgccacttgtaatatct |
474 |
Q |
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| T |
8647344 |
agtacatccaaacacagtgtggtctttccatttgcatagtgcatatctgccacctgcaatatct |
8647281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 13 - 176
Target Start/End: Complemental strand, 8648013 - 8647850
Alignment:
| Q |
13 |
aatatatttcatcacaccttccctagagagagatccttcttggtcatggttccctaaaacagccacccaaggaatgtttgattcaattgcaggagcaaat |
112 |
Q |
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| T |
8648013 |
aatatatttcatcacaccttccctagagagtgatccttcttggtcatggttccctaaaacagccacccaaggaatgtttgattcaattgcaggagcaaat |
8647914 |
T |
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| Q |
113 |
gcagcgtccatcgatttagccgaatccgaggaatcatgaccatagatgttatctcctgtcatac |
176 |
Q |
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| T |
8647913 |
gcagcgttcatcgatttagccgaatccgaggaatcatagccatagatattatctcctgtcatac |
8647850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 311 - 474
Target Start/End: Complemental strand, 8641135 - 8640972
Alignment:
| Q |
311 |
aataccagtgaagacaataagattaggcttctcagcaaggatcatcctatgaatgaaagcagtagtattgaggtcagtacaagaagccttctgagaagga |
410 |
Q |
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| T |
8641135 |
aataccagtgaagacaataagattaggcttctcagcaaggatcatcctatgaatgaaagcagtagtattgaggtcagtacaagaagcattttgtgaagga |
8641036 |
T |
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| Q |
411 |
agtacatccaaacacagtgtattctttccatttgcatagtgcatatctgccacttgtaatatct |
474 |
Q |
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| T |
8641035 |
aggacatttaagcaaagtgtattctttccatttgcatagtgcatatctgccacttgtaatatct |
8640972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 390 - 474
Target Start/End: Original strand, 1391625 - 1391709
Alignment:
| Q |
390 |
caagaagccttctgagaaggaagtacatccaaacacagtgtattctttccatttgcatagtgcatatctgccacttgtaatatct |
474 |
Q |
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|||||||| || || ||||||| ||||| || || |||||| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1391625 |
caagaagcattttgtgaaggaaaaacatctaagcaaagtgtagtctttccatttgcatagtgcatatctgccacttgtaaaatct |
1391709 |
T |
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