View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14246_low_6 (Length: 476)
Name: NF14246_low_6
Description: NF14246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14246_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 133 - 464
Target Start/End: Complemental strand, 4709142 - 4708811
Alignment:
| Q |
133 |
gcgctactatgcatgggcttcacactggattatatgttatattggttgagtaatggtgggttatatttagaaatctcaaacatttgaagttatctagttt |
232 |
Q |
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| T |
4709142 |
gcgctactatgcatgagcttcacactggattatatgttatattggttgagtaatggtgggttatatttagaaatctcaaacatttgaagttatctagttt |
4709043 |
T |
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| Q |
233 |
ttcgctcaattttctgtttttcactaatttgattgaaaaaatgaaggttcttttgttaaatggcacacatgtccggaagactaacggattttcagcttct |
332 |
Q |
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| T |
4709042 |
ttcgctcaattttctgtttttcactaatttgattgaaaaaatgaaggttcttatgttaaatggcacacatgaccggaagactaacggattttcagcttct |
4708943 |
T |
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| Q |
333 |
tgttttgttactgctattacggatgctctaaatcgaacatatggagaaccttgtaaccgtttacagaatcttgagagaattccttcctattgaaactact |
432 |
Q |
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| T |
4708942 |
tgttttgttactgctattacggatgctctaaatcgaacatatggagaaccttgtaaccgtttacagaatcttgagagaattccttcctattgaaactact |
4708843 |
T |
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| Q |
433 |
tggtgtcactattattattaatgggttacctt |
464 |
Q |
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| T |
4708842 |
tggtgtcactattattattaatgggttacctt |
4708811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 139 - 451
Target Start/End: Complemental strand, 4747081 - 4746767
Alignment:
| Q |
139 |
ctatgcatgggcttcacactggattatatgttatattggttgagtaatggtgggttatatttagaaatctcaaacatttgaagttatctagtttttcgct |
238 |
Q |
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||||||||| ||||||||||| ||||| |||| ||||| |||||||||| ||||||| |||| |||| ||||||||||||||||||||| ||||| ||| |
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| T |
4747081 |
ctatgcatgagcttcacactgtattatctgttttattgattgagtaatgttgggttagatttgaaaatttcaaacatttgaagttatctactttttagct |
4746982 |
T |
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| Q |
239 |
caattttctgtttttcactaatttgattga--aaaaatgaaggttcttttgttaaatggcacacatgtccggaagactaacggattttcagcttcttgtt |
336 |
Q |
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| T |
4746981 |
taattttcagtttttcactaatttgattgacaaaaaatgaaggtacttatgttaaatggcacacatgaccgggagactaatggattttcagcttcttgtt |
4746882 |
T |
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| Q |
337 |
ttgttactgctattacggatgctctaaatcgaacatatggagaaccttgtaaccgtttacagaatcttgagagaattccttcctattgaaactacttggt |
436 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| | |
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| T |
4746881 |
ttgtaactgctattacggatgctctaaatcgaacatatggagaaccttgcaaccgtttacagaatcttgtgagaattccttcctattgaaactacttgat |
4746782 |
T |
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| Q |
437 |
gtcactattattatt |
451 |
Q |
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|||| |||||||||| |
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| T |
4746781 |
gtcaatattattatt |
4746767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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