View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14247_high_3 (Length: 485)
Name: NF14247_high_3
Description: NF14247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14247_high_3 |
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| [»] scaffold0325 (1 HSPs) |
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| [»] scaffold0047 (1 HSPs) |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: scaffold0325 (Bit Score: 141; Significance: 1e-73; HSPs: 1)
Name: scaffold0325
Description:
Target: scaffold0325; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 309 - 469
Target Start/End: Complemental strand, 10914 - 10754
Alignment:
| Q |
309 |
aatgagtaatgctatatcgcacgacagtttagccgcacgacatgcacgacaacacaattttccattactcatggtcagagactttatggattttcaacaa |
408 |
Q |
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|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
10914 |
aatgagtaatgctatatcgcacgacagtttagtcacacgacatgcacgacaacacaatttttcattactcatggtcagagactttatggattttcaacaa |
10815 |
T |
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| Q |
409 |
ataaaataatataaattttgatacaatagcctctctttgtctatcacccactcacagtttt |
469 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
10814 |
ataaaataatataaattttgatacaacagcctctctttgtctatcacccactcacattttt |
10754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 130; Significance: 4e-67; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 312 - 469
Target Start/End: Complemental strand, 18069719 - 18069562
Alignment:
| Q |
312 |
gagtaatgctatatcgcacgacagtttagccgcacgacatgcacgacaacacaattttccattactcatggtcagagactttatggattttcaacaaata |
411 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
18069719 |
gagtaatgctatatcgcacgacagtttagccacacgacatgcacgacaacgcaaattttcattactcatggtcagagactttatggattttcaacaaata |
18069620 |
T |
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| Q |
412 |
aaataatataaattttgatacaatagcctctctttgtctatcacccactcacagtttt |
469 |
Q |
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||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||| |
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| T |
18069619 |
aaataatataaattttgatacaacaacctctctttgtctatcacccactcacattttt |
18069562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 43505411 - 43505554
Alignment:
| Q |
1 |
aaattaatattcagtggtagaatgttagtaaatatataatgatggaaaacaagaatttcaatgtaaccgcaaatacctttgtaaataagagttgttcttt |
100 |
Q |
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||||||| |||||||||||||||||||| | | ||||||||||||||||| |||||||| ||||| ||| ||| ||| |||||||||||||||||| |
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| T |
43505411 |
aaattaacattcagtggtagaatgttag--agtgaataatgatggaaaacaaaaatttcaacataaccacaactactattgcaaataagagttgttcttt |
43505508 |
T |
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| Q |
101 |
c----aacaaaattctcctatctccaaaacctgcacatactatatg |
142 |
Q |
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| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
43505509 |
cttccaacaaaattctcctatctccaaagcctgcacatactatatg |
43505554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 39071120 - 39071263
Alignment:
| Q |
1 |
aaattaatattcagtggtagaatgttagtaaatatataatgatggaaaacaagaatttcaatgtaaccgcaaatacctttgtaaataagagttgttcttt |
100 |
Q |
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||||||| |||| ||||||||||||||| | | ||||||||||||||||| |||||||| ||||| ||| ||| ||| |||||||||||||||||| |
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| T |
39071120 |
aaattaacattcggtggtagaatgttag--agtgaataatgatggaaaacaaaaatttcaacataaccacaactactattgcaaataagagttgttcttt |
39071217 |
T |
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| Q |
101 |
c----aacaaaattctcctatctccaaaacctgcacatactatatg |
142 |
Q |
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| ||||||||||||||||||||||| |||||| |||||||||| |
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| T |
39071218 |
cttccaacaaaattctcctatctccaaagcctgcaaatactatatg |
39071263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 130; Significance: 4e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 312 - 469
Target Start/End: Original strand, 24900339 - 24900496
Alignment:
| Q |
312 |
gagtaatgctatatcgcacgacagtttagccgcacgacatgcacgacaacacaattttccattactcatggtcagagactttatggattttcaacaaata |
411 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
24900339 |
gagtaatgctatatcgcacgacagtttagccacacgacatgcacgacaacgcaaattttcattactcatggtcagagactttatggattttcaacaaata |
24900438 |
T |
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| Q |
412 |
aaataatataaattttgatacaatagcctctctttgtctatcacccactcacagtttt |
469 |
Q |
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||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||| |
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| T |
24900439 |
aaataatataaattttgatacaacaacctctctttgtctatcacccactcacattttt |
24900496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 14833889 - 14833941
Alignment:
| Q |
90 |
agttgttctttcaacaaaattctcctatctccaaaacctgcacatactatatg |
142 |
Q |
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||||||||||||||||||||| ||||||||||||||| | ||||||||||||| |
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| T |
14833889 |
agttgttctttcaacaaaattatcctatctccaaaacattcacatactatatg |
14833941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 130; Significance: 4e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 312 - 469
Target Start/End: Original strand, 52266549 - 52266705
Alignment:
| Q |
312 |
gagtaatgctatatcgcacgacagtttagccgcacgacatgcacgacaacacaattttccattactcatggtcagagactttatggattttcaacaaata |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
52266549 |
gagtaatgctatatcgcacgacagtttagccacacgacatgcacgacaacacaatttttcattactcatggtcagagactttatggatttttaacaaat- |
52266647 |
T |
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| Q |
412 |
aaataatataaattttgatacaatagcctctctttgtctatcacccactcacagtttt |
469 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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|
| T |
52266648 |
aaataatataaattttgatacaagagcctctctttgtctatcacccactcacattttt |
52266705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 126; Significance: 9e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 348400 - 348259
Alignment:
| Q |
1 |
aaattaatattcagtggtagaatgttagtaaatatataatgatggaaaacaagaatttcaatgtaaccgcaaatacctttgtaaataagagttgttcttt |
100 |
Q |
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|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
348400 |
aaattaatattcagtggtagaatattagtaaatatataatgatggaaaacaagaatttcaatgtaaccacaactacctttgtaaataagagttgttcttt |
348301 |
T |
|
| Q |
101 |
caacaaaattctcctatctccaaaacctgcacatactatatg |
142 |
Q |
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|
|||||||||||||||||||||||||||| ||||||||||||| |
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| T |
348300 |
caacaaaattctcctatctccaaaacctacacatactatatg |
348259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 204 - 291
Target Start/End: Complemental strand, 42124748 - 42124661
Alignment:
| Q |
204 |
ggaagggacagaaagaaacatgtgagtagtgtggttagcatcagtatcaatatcaaaagtctaataaaatggcctatatattgttgta |
291 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42124748 |
ggaagggacagaaagaaacatgtgagtagtgtggttagcatcagtatcaatatcaaaagtctaataaaatggcctatatagtgttgta |
42124661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 54 - 142
Target Start/End: Complemental strand, 42124909 - 42124821
Alignment:
| Q |
54 |
aatttcaatgtaaccgcaaatacctttgtaaataagagttgttctttcaacaaaattctcctatctccaaaacctgcacatactatatg |
142 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| | | |||||||||| |
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| T |
42124909 |
aatttcaatgtaaccacaaccacctttgtaaataagagttgttctttcaacaaaattctcctgtctccaaaacccgtatatactatatg |
42124821 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 30723 - 30775
Alignment:
| Q |
90 |
agttgttctttcaacaaaattctcctatctccaaaacctgcacatactatatg |
142 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| | ||||||||||||| |
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|
| T |
30723 |
agttgttctttcaacaaaattatcctatctccaaaacattcacatactatatg |
30775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 5810 - 5758
Alignment:
| Q |
90 |
agttgttctttcaacaaaattctcctatctccaaaacctgcacatactatatg |
142 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| | ||||||||||||| |
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|
| T |
5810 |
agttgttctttcaacaaaattatcctatctccaaaacattcacatactatatg |
5758 |
T |
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