View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14247_high_8 (Length: 313)

Name: NF14247_high_8
Description: NF14247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14247_high_8
NF14247_high_8
[»] chr3 (3 HSPs)
chr3 (1-300)||(40966067-40966366)
chr3 (30-87)||(33309977-33310035)
chr3 (30-89)||(31989800-31989860)
[»] chr2 (2 HSPs)
chr2 (30-87)||(35665325-35665383)
chr2 (30-85)||(17642631-17642687)
[»] chr7 (1 HSPs)
chr7 (32-87)||(30219060-30219116)
[»] chr4 (2 HSPs)
chr4 (30-85)||(44340988-44341044)
chr4 (30-85)||(51203221-51203277)
[»] chr5 (1 HSPs)
chr5 (30-87)||(36060768-36060826)
[»] chr8 (1 HSPs)
chr8 (30-85)||(33657600-33657656)


Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 40966366 - 40966067
Alignment:
Q  1 ttttgggaggaagaaaacatgtttttatatttagggactaaaataagaattcgctatatttttaggacggaaaacttatttaacccttacattaatctca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  40966366 ttttgggaggaagaaaacatgtttttatatttagggactaaaataagaattcgctatatttttaggatggaaaacttatttaacccttacattaatctca 40966267  T
Q  101 gaacttctattctactactcataataataactaacaaaatagtgatgaatgatgatgccttacttgtttgaaagcttctcaatgcgcacttgaatggtgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40966266 gaacttctattctactactcataataataactaacaaaatagtgatgaatgatgatgccttacttgtttgaaagcttctcaatgcgcacttgaatggtgg 40966167  T
Q  201 aattaaccaaagttttaaaagcataaatttgcaagtcaccatcaaaagacatagtaacctctttagcaattgctaatgcttttttatcccaccatgttcc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40966166 aattaaccaaagttttaaaagcataaatttgcaagtcaccatcaaaagacatagtaacctctttagcaattgctaatgcttttttatcccaccatgttcc 40966067  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 33309977 - 33310035
Alignment:
Q  30 tttagggactaaaataagaattcgctatattttta-ggacggaaaacttatttaaccct 87  Q
    ||||||||||||||||| |||||||||||| |||| ||| | |||||||||||||||||    
T  33309977 tttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaaccct 33310035  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 31989860 - 31989800
Alignment:
Q  30 tttagggactaaaataagaattcgctatattttta-ggacggaaaacttatttaaccctta 89  Q
    ||||||||||||||| | |||| | ||||||| || ||||| |||||||||||||||||||    
T  31989860 tttagggactaaaatgaaaatttgatatatttatatggacgaaaaacttatttaaccctta 31989800  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 35665383 - 35665325
Alignment:
Q  30 tttagggactaaaataagaattcgctatattt-ttaggacggaaaacttatttaaccct 87  Q
    ||||||||||||||| | |||||||||||||| | |||||| |||||||||||||||||    
T  35665383 tttagggactaaaatcaaaattcgctatatttataaggacgaaaaacttatttaaccct 35665325  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 17642631 - 17642687
Alignment:
Q  30 tttagggactaaaataagaattcgctatattttta-ggacggaaaacttatttaacc 85  Q
    |||| |||||||||| | ||||||||||||||||| ||||| |||||||||||||||    
T  17642631 tttaaggactaaaatcaaaattcgctatatttttagggacgaaaaacttatttaacc 17642687  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 30219060 - 30219116
Alignment:
Q  32 tagggactaaaataagaattcgctatattt-ttaggacggaaaacttatttaaccct 87  Q
    ||||||||||||| | |||||||||||||| | |||||| |||||||||||||||||    
T  30219060 tagggactaaaatcaaaattcgctatatttataaggacgaaaaacttatttaaccct 30219116  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 44340988 - 44341044
Alignment:
Q  30 tttagggactaaaataagaattcgctatatttt-taggacggaaaacttatttaacc 85  Q
    ||||||||||||||| |||||||| ||| |||| ||||||| |||||||||||||||    
T  44340988 tttagggactaaaatcagaattcgttatgttttttaggacgaaaaacttatttaacc 44341044  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 51203277 - 51203221
Alignment:
Q  30 tttagggactaaaataagaattcgctatattttta-ggacggaaaacttatttaacc 85  Q
    ||||||||||||||| | ||||||| |||||| || ||||| |||||||||||||||    
T  51203277 tttagggactaaaatcaaaattcgcaatatttatagggacgaaaaacttatttaacc 51203221  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 36060768 - 36060826
Alignment:
Q  30 tttagggactaaaataagaattcgctatatttttag-gacggaaaacttatttaaccct 87  Q
    ||||||||||||||| | ||||| ||||||||||||  ||| |||||||||||||||||    
T  36060768 tttagggactaaaatcaaaattcactatatttttagaaacgaaaaacttatttaaccct 36060826  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 33657600 - 33657656
Alignment:
Q  30 tttagggactaaaataagaattcgctatattttt-aggacggaaaacttatttaacc 85  Q
    |||||| |||||||| | |||||||||||||||| |||||| |||| ||||||||||    
T  33657600 tttaggaactaaaatcaaaattcgctatatttttaaggacgaaaaatttatttaacc 33657656  T

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