View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14247_low_1 (Length: 657)

Name: NF14247_low_1
Description: NF14247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14247_low_1
NF14247_low_1
[»] chr7 (2 HSPs)
chr7 (240-648)||(12417445-12417853)
chr7 (21-151)||(12417226-12417356)
[»] chr8 (2 HSPs)
chr8 (487-551)||(13223967-13224031)
chr8 (585-618)||(30213771-30213804)
[»] scaffold0032 (1 HSPs)
scaffold0032 (585-618)||(78775-78808)
[»] chr4 (4 HSPs)
chr4 (585-618)||(18445336-18445369)
chr4 (585-620)||(19052738-19052773)
chr4 (585-620)||(22223463-22223498)
chr4 (575-620)||(39981249-39981294)
[»] chr1 (2 HSPs)
chr1 (575-620)||(12439926-12439971)
chr1 (585-620)||(12397235-12397270)
[»] chr2 (2 HSPs)
chr2 (573-613)||(14794468-14794508)
chr2 (585-620)||(8685016-8685051)
[»] chr5 (3 HSPs)
chr5 (585-620)||(22747821-22747856)
chr5 (575-620)||(32452513-32452558)
chr5 (587-619)||(22820785-22820817)
[»] chr6 (2 HSPs)
chr6 (585-618)||(20395346-20395379)
chr6 (580-620)||(28952698-28952738)
[»] chr3 (1 HSPs)
chr3 (584-620)||(20747321-20747357)


Alignment Details
Target: chr7 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 240 - 648
Target Start/End: Original strand, 12417445 - 12417853
Alignment:
Q  240 gatgtcacccttatgcacataaaataaaggtagaccatttaacaccttacaaagtgcctatgtacctttctcatttttatgaattagcttatgattcctc 339  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  12417445 gatgtcacccttatacacataaaataaaggtagaccatttaacaccttacaaagtgcctatgtacctttctcatttttatgaattagcttatgattcgtc 12417544  T
Q  340 actcatatcaacaatttcaaaattgttctccaatacaacattcacctcgataaattttttaagaagatcataatgcaagaaaaaataagttactgtaaga 439  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12417545 actcatatcaacaatttcaaaattgttctccaatacaacattcacctcgataaattttttaagaagatcataatgcaagaaaaaataagttactgtaaga 12417644  T
Q  440 cttataagtaaatattgggcgtggggggaagctttttgtggctttacttttctttagtttaacatcctaatcagaatctaagatattcagattctgatgt 539  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12417645 cttataagtaaatattgggcgtggggggaagctttttgtggctttacttttctttagtttaacatcctaatcagaatctaagatattcagattctgatgt 12417744  T
Q  540 agagtctgagtgcagcacattaagtacaaaacacaacaattcagaagtagtccagtcctcttgcacttccaagggatttcaagtatatatacataacaga 639  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12417745 agagtctgagtgcagcacattaagtacaaaacacaacaattcagaagtagtccagtcctcttgcacttccaagggatttcaagtatatatacataacaga 12417844  T
Q  640 tagtataat 648  Q
    |||||||||    
T  12417845 tagtataat 12417853  T

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Target: chr7; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 21 - 151
Target Start/End: Original strand, 12417226 - 12417356
Alignment:
Q  21 aatgcttgcacatttgtactttcaacttctcattaatctcaattggatttttgtaagccaaagcttaacaaacatatacatattttagtttatatttttg 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12417226 aatgcttgcacatttgtactttcaacttctcattaatctcaattggatttttgtaagccaaagcttaacaaacatatacatattttagtttatatttttg 12417325  T
Q  121 caagatgtatatataaatagagtttcgttgg 151  Q
    |||||||||||||||||||||||| ||||||    
T  12417326 caagatgtatatataaatagagttgcgttgg 12417356  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 487 - 551
Target Start/End: Complemental strand, 13224031 - 13223967
Alignment:
Q  487 ttttctttagtttaacatcctaatcagaatctaagatattcagattctgatgtagagtctgagtg 551  Q
    |||||||| ||| |||| ||| ||||||||||||||||| || ||||||||||||||||||||||    
T  13224031 ttttctttggttgaacagcctgatcagaatctaagatatacatattctgatgtagagtctgagtg 13223967  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 585 - 618
Target Start/End: Original strand, 30213771 - 30213804
Alignment:
Q  585 agtagtccagtcctcttgcacttccaagggattt 618  Q
    ||||||||||||| ||||||||||||||||||||    
T  30213771 agtagtccagtccccttgcacttccaagggattt 30213804  T

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Target: scaffold0032 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 585 - 618
Target Start/End: Original strand, 78775 - 78808
Alignment:
Q  585 agtagtccagtcctcttgcacttccaagggattt 618  Q
    ||||||||||||||||||||||||||||||||||    
T  78775 agtagtccagtcctcttgcacttccaagggattt 78808  T

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Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 585 - 618
Target Start/End: Original strand, 18445336 - 18445369
Alignment:
Q  585 agtagtccagtcctcttgcacttccaagggattt 618  Q
    ||||||||||||||||||||||||||||||||||    
T  18445336 agtagtccagtcctcttgcacttccaagggattt 18445369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 585 - 620
Target Start/End: Original strand, 19052738 - 19052773
Alignment:
Q  585 agtagtccagtcctcttgcacttccaagggatttca 620  Q
    ||||||||||||| ||||||||||||||||||||||    
T  19052738 agtagtccagtccccttgcacttccaagggatttca 19052773  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 585 - 620
Target Start/End: Complemental strand, 22223498 - 22223463
Alignment:
Q  585 agtagtccagtcctcttgcacttccaagggatttca 620  Q
    ||||||| ||||||||||||||||||||||||||||    
T  22223498 agtagtcaagtcctcttgcacttccaagggatttca 22223463  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 575 - 620
Target Start/End: Complemental strand, 39981294 - 39981249
Alignment:
Q  575 acaattcagaagtagtccagtcctcttgcacttccaagggatttca 620  Q
    ||||| ||| ||||||||||||| ||||||||||||||| ||||||    
T  39981294 acaatccaggagtagtccagtccacttgcacttccaaggaatttca 39981249  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 575 - 620
Target Start/End: Complemental strand, 12439971 - 12439926
Alignment:
Q  575 acaattcagaagtagtccagtcctcttgcacttccaagggatttca 620  Q
    ||||||||| |||| |||| ||||||||||||||||||||||||||    
T  12439971 acaattcaggagtactccaatcctcttgcacttccaagggatttca 12439926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 585 - 620
Target Start/End: Original strand, 12397235 - 12397270
Alignment:
Q  585 agtagtccagtcctcttgcacttccaagggatttca 620  Q
    ||||||||||||| ||||||||||||||||||||||    
T  12397235 agtagtccagtccccttgcacttccaagggatttca 12397270  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 573 - 613
Target Start/End: Complemental strand, 14794508 - 14794468
Alignment:
Q  573 caacaattcagaagtagtccagtcctcttgcacttccaagg 613  Q
    ||||||||| ||||||||||||||| |||||||||||||||    
T  14794508 caacaattcggaagtagtccagtccccttgcacttccaagg 14794468  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 585 - 620
Target Start/End: Original strand, 8685016 - 8685051
Alignment:
Q  585 agtagtccagtcctcttgcacttccaagggatttca 620  Q
    ||||||||||||| ||||||||||||||||||||||    
T  8685016 agtagtccagtccccttgcacttccaagggatttca 8685051  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 585 - 620
Target Start/End: Original strand, 22747821 - 22747856
Alignment:
Q  585 agtagtccagtcctcttgcacttccaagggatttca 620  Q
    ||||||||||||| ||||||||||||||||||||||    
T  22747821 agtagtccagtccccttgcacttccaagggatttca 22747856  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 575 - 620
Target Start/End: Complemental strand, 32452558 - 32452513
Alignment:
Q  575 acaattcagaagtagtccagtcctcttgcacttccaagggatttca 620  Q
    ||||| ||||||||||||||||| ||| ||||| ||||||||||||    
T  32452558 acaatccagaagtagtccagtccccttacactttcaagggatttca 32452513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 587 - 619
Target Start/End: Original strand, 22820785 - 22820817
Alignment:
Q  587 tagtccagtcctcttgcacttccaagggatttc 619  Q
    |||||||||||||||||||||||||| ||||||    
T  22820785 tagtccagtcctcttgcacttccaagagatttc 22820817  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 585 - 618
Target Start/End: Original strand, 20395346 - 20395379
Alignment:
Q  585 agtagtccagtcctcttgcacttccaagggattt 618  Q
    |||||||||||||||||||||||| |||||||||    
T  20395346 agtagtccagtcctcttgcacttctaagggattt 20395379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 580 - 620
Target Start/End: Complemental strand, 28952738 - 28952698
Alignment:
Q  580 tcagaagtagtccagtcctcttgcacttccaagggatttca 620  Q
    |||| |||||||||||||||||||||||| |||| ||||||    
T  28952738 tcaggagtagtccagtcctcttgcacttctaaggaatttca 28952698  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 584 - 620
Target Start/End: Complemental strand, 20747357 - 20747321
Alignment:
Q  584 aagtagtccagtcctcttgcacttccaagggatttca 620  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  20747357 aagtagtccagtccccttgcactttcaagggatttca 20747321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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