View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14247_low_10 (Length: 301)
Name: NF14247_low_10
Description: NF14247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14247_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 35097692 - 35097395
Alignment:
| Q |
1 |
tgaagtcactgcacaattattcaattaaatcataaaaa------atattaacaattttattttaggttattgttatgtagaattcatgtcttactatgga |
94 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35097692 |
tgaagtcactgcacaattattcaattaaaccataaaaactgcaaatattaacaattttattttaggttattgttatgtagaattcatgtcttactatgga |
35097593 |
T |
|
| Q |
95 |
gcagaaccatcctctggatgactcataagccttgagattccgccgcagcgactatgtccaataaccaagatgttctccacctgaaaaaagtaattaattt |
194 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35097592 |
gcagaaccatcctctggatgattcataagccttgagattccgccgcagcgactatgtccaataaccaagatgttctccacctgaaaaaagtaattaattt |
35097493 |
T |
|
| Q |
195 |
ttatcc----nnnnnnnngtataatgatttgtttttcttttagaaagttatggcaaaaggattttatgatttctgtctcctctaaggaagagcttaat |
288 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |
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| T |
35097492 |
ttatccaaaaaaaaaaaagtataatgatttgtttttcttttagaaagttatggcaaaaagattttatgatttctacctcctctaaggaagagcttaat |
35097395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 37 - 200
Target Start/End: Complemental strand, 35103381 - 35103222
Alignment:
| Q |
37 |
aaatattaacaattttattttaggttattgttatgtagaattcatgtcttactatggagcagaaccatcctctggatgactcataagccttgagattccg |
136 |
Q |
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|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| | | ||||||||||||||||| |
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| T |
35103381 |
aaatattaacaattttattttagattattgttatgtagaattcatgtcttactatggagcag--ccatcctctggaaggc--ataagccttgagattcca |
35103286 |
T |
|
| Q |
137 |
ccgcagcgactatgtccaataaccaagatgttctccacctgaaaaaagtaattaatttttatcc |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||| |
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|
| T |
35103285 |
ccgcagcgactatgtccaataaccaagatgttctccacctaaaaatattaattaatttttatcc |
35103222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 48 - 199
Target Start/End: Complemental strand, 35110723 - 35110572
Alignment:
| Q |
48 |
attttattttaggttattgttatgtagaattcatgtcttactatggagcagaaccatcctctggatgactcataagccttgagattccgccgcagcgact |
147 |
Q |
| |
|
|||||| |||| || | |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
35110723 |
attttagtttatgtaaatgttatgtagaattcaagccttactatggagcagaaccatcctctggatgactcataagccttgatataccgccgcagcgact |
35110624 |
T |
|
| Q |
148 |
atgtccaataaccaagatgttctccacctgaaaaaagtaattaatttttatc |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
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|
| T |
35110623 |
atgtccaataaccaagatgttctccacctgaaaaaggtaattgatttttatc |
35110572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 288
Target Start/End: Complemental strand, 13234589 - 13234551
Alignment:
| Q |
250 |
gattttatgatttctgtctcctctaaggaagagcttaat |
288 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |
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|
| T |
13234589 |
gattttatgatttctgcctcctctaaggaagagcttaat |
13234551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 288
Target Start/End: Original strand, 8768575 - 8768613
Alignment:
| Q |
250 |
gattttatgatttctgtctcctctaaggaagagcttaat |
288 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |
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|
| T |
8768575 |
gattttatgatttctgcctcctctaaggaagagcttaat |
8768613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 288
Target Start/End: Complemental strand, 42913114 - 42913076
Alignment:
| Q |
250 |
gattttatgatttctgtctcctctaaggaagagcttaat |
288 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |
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|
| T |
42913114 |
gattttatgatttctgcctcctctaaggaagagcttaat |
42913076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 288
Target Start/End: Original strand, 5268329 - 5268367
Alignment:
| Q |
250 |
gattttatgatttctgtctcctctaaggaagagcttaat |
288 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |
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|
| T |
5268329 |
gattttatgatttctgcctcctctaaggaagagcttaat |
5268367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 288
Target Start/End: Original strand, 6944667 - 6944705
Alignment:
| Q |
250 |
gattttatgatttctgtctcctctaaggaagagcttaat |
288 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |
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|
| T |
6944667 |
gattttatgatttctgcctcctctaaggaagagcttaat |
6944705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 288
Target Start/End: Complemental strand, 18032139 - 18032101
Alignment:
| Q |
250 |
gattttatgatttctgtctcctctaaggaagagcttaat |
288 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
18032139 |
gattttatgatttctgcctcctctaaggaagagcttaat |
18032101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 288
Target Start/End: Complemental strand, 18302423 - 18302385
Alignment:
| Q |
250 |
gattttatgatttctgtctcctctaaggaagagcttaat |
288 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |
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| T |
18302423 |
gattttatgatttctgcctcctctaaggaagagcttaat |
18302385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 288
Target Start/End: Complemental strand, 37874774 - 37874736
Alignment:
| Q |
250 |
gattttatgatttctgtctcctctaaggaagagcttaat |
288 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |
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|
| T |
37874774 |
gattttatgatttctgcctcctctaaggaagagcttaat |
37874736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 11682585 - 11682622
Alignment:
| Q |
1 |
tgaagtcactgcacaattattcaattaaatcataaaaa |
38 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||| |
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|
| T |
11682585 |
tgaagtcactgcataattattcaattaaaccataaaaa |
11682622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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