View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14247_low_11 (Length: 294)
Name: NF14247_low_11
Description: NF14247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14247_low_11 |
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| [»] scaffold0066 (1 HSPs) |
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Alignment Details
Target: scaffold0066 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0066
Description:
Target: scaffold0066; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 14 - 271
Target Start/End: Original strand, 17787 - 18044
Alignment:
| Q |
14 |
tgagatgaaagaaaatccatgttgcactccataatatgcatgcacctgttacagaaaaaacaccctcaaatgccaaaaatattagaactgctaaagccaa |
113 |
Q |
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| T |
17787 |
tgagatgaaagaaaatccatgttgcactaaataatatgcctgtacctgttacagaaaaaacgccctcaaatgccaaaaatattagaactgctaaagccaa |
17886 |
T |
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| Q |
114 |
agcctccttttcttgccgtcaacttgaactgatttaataataaccacgtttagctccttaaaacacacagcatcataagactccctctgcttccaaccaa |
213 |
Q |
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| T |
17887 |
agcctcctcttcttgctgtcaacttgaactgattgaataataaccacatttagcttcttaaaacaaacagcatcataagactccctctgcttccaaccaa |
17986 |
T |
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| Q |
214 |
aagcgccacaccctatgagaaagtcccctctacagcaggcagaccgaaacaccacagc |
271 |
Q |
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| T |
17987 |
aagcaccagaccctatgagaatgtcccctctacagacggccgaccgaaacaccacagc |
18044 |
T |
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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 270
Target Start/End: Complemental strand, 7425895 - 7425688
Alignment:
| Q |
54 |
tgcacctgttacagaaaaaacaccctcaaatgccaaaaatattagaactgctaaagccaaagcctccttttcttgccgtcaacttgaactgatttaataa |
153 |
Q |
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|||||||||||||||||| ||| |||||||||||||||| || |||||||||||| | |||| |||| ||| ||||| | ||||||||| |
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| T |
7425895 |
tgcacctgttacagaaaaggcactctcaaatgccaaaaattataaccctgctaaagccatatcctc------ttgctaccaaattgaagtaatttaataa |
7425802 |
T |
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| Q |
154 |
taaccacgtttagctccttaaaacacacagcatcataagactccctctgcttccaaccaaaagcgccacaccctatgagaaagtcccctctacagcaggc |
253 |
Q |
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| T |
7425801 |
taaccacctt-agctcct--atactcacagcaccacaagactccctctgcttccaaacaaaagctcgagacattaagagaacattccctcttcagcagac |
7425705 |
T |
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| Q |
254 |
agaccgaaacaccacag |
270 |
Q |
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| T |
7425704 |
cgacagaaacaccacag |
7425688 |
T |
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