View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14247_low_13 (Length: 286)
Name: NF14247_low_13
Description: NF14247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14247_low_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 5 - 268
Target Start/End: Original strand, 7022323 - 7022582
Alignment:
| Q |
5 |
aaaagtgagttgtttataatttgaactctgatcactatatattttctctatcaattgagttaagctcaggagacaacttatacttctttatataccaaca |
104 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
7022323 |
aaaagtgagctgtttataattcgaactctgatctctatatattttctctatcaattgagttaagctcaggagacaacttatacttgtttatataccaaca |
7022422 |
T |
|
| Q |
105 |
aaagaagctgatacctctattgagtttattgtttaatttaaagcaaatgatatctctgttgttcataaaggctacatccctcttatatacgtacagtacc |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
7022423 |
aaagaagctgatacctctattgagtttattgtttaatttaaagcaaatgatatctctgttgttcataaaggctacatccctcttatatat----aggacc |
7022518 |
T |
|
| Q |
205 |
atgttcaaatttttcgctgtcacttttacaagacacctttcaaattttcaattgttttaattat |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7022519 |
atgttcaaatttttcgctgtcacttttacaagaaacctttcaaattttcaattgttttaattat |
7022582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University