View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14247_low_14 (Length: 274)
Name: NF14247_low_14
Description: NF14247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14247_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 18 - 264
Target Start/End: Complemental strand, 8531550 - 8531302
Alignment:
| Q |
18 |
gaaatgtatacataggcattgtcgaacttttccctcaatgctattcataatgattccctaacatacaatatcattgttgaacaattcctactgcacttta |
117 |
Q |
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| T |
8531550 |
gaaatgtatacataggcattgtcgaacttttccctcaatgctattcataatgattccctaacatacagtatcattgttgaacaattcctactgcacttta |
8531451 |
T |
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| Q |
118 |
agctatgannnnnnnaagaatgaacagaagaagctacttgtagaagagtaaatattattacattacttggatagtctttaac-aaagacatcctaaaaac |
216 |
Q |
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| T |
8531450 |
agctatgatttttttaagaatgaacaaaggaagctacttgcaaaagagtaaatattattacactacatggatagtctttaacaaaagacatcctaagaac |
8531351 |
T |
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| Q |
217 |
caaatgctcactatgtttcctaaatatcataaggttct-cctccctttg |
264 |
Q |
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| T |
8531350 |
caaatgctcactatttttcctaaacatcataaggttctccctccctttg |
8531302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 28697692 - 28697740
Alignment:
| Q |
59 |
tattcataatgattccctaacatacaatatcattgttgaacaattccta |
107 |
Q |
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| T |
28697692 |
tattcataatgattccctaatatacaatagcattgtggaactattccta |
28697740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 226
Target Start/End: Complemental strand, 24183964 - 24183912
Alignment:
| Q |
173 |
tattacattacttggatagtctttaacaaagacatcctaaaaaccaaatgctca |
226 |
Q |
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| T |
24183964 |
tattacattacatggatagtctt-aacacagacttcctaaaagccaaatgctca |
24183912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 54 - 264
Target Start/End: Original strand, 5154725 - 5154935
Alignment:
| Q |
54 |
aatgctattcataatgattccctaacatacaatatcattgttgaacaattcctactgcactttaagctatgannnnnnnaagaatgaacagaagaagcta |
153 |
Q |
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| T |
5154725 |
aatgctattcataatgattccctaacatacaatatcattgttgaacaattcctactgcactttaagctatgatttttttaagaatgaacaaaagaagcta |
5154824 |
T |
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| Q |
154 |
cttgtagaagagtaaatattattacattacttggatagtctttaacaaagacatcctaaaaaccaaatgctcactatgtttcctaaatatcataaggttc |
253 |
Q |
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| T |
5154825 |
cttgcagaagagtaaatattattacattacatggatagtctttaacaaagacatcctaaaaaccaaatgcacattatgtttcctaaacatcataaggttc |
5154924 |
T |
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| Q |
254 |
tcctccctttg |
264 |
Q |
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| T |
5154925 |
tcctccctttg |
5154935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 183
Target Start/End: Original strand, 3384257 - 3384354
Alignment:
| Q |
86 |
tatcattgttgaacaattcctactgcactttaagctatgannnnnnnaagaatgaacagaagaagctacttgtagaagagtaaatattattacattac |
183 |
Q |
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| T |
3384257 |
tatcattgttgaacttttcctactgcactctaagctatgatttttttaagaatgaaaaaaataagttacttgcagaagagtaaatattattacattac |
3384354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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