View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14247_low_15 (Length: 246)
Name: NF14247_low_15
Description: NF14247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14247_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 2766561 - 2766433
Alignment:
| Q |
1 |
aacaagattcagtctccatcatcactcaccaaacaatttgaaaattgtattttaaaacacaac-nnnnnnngggtggtgatattttaaaacaactaacac |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2766561 |
aacaagattcagtctccatcatcactcaccaaacaatttgaaaattgtattttaaaacacaactttttttttggtggtgatattttaaaacaactaacac |
2766462 |
T |
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| Q |
100 |
cattgaagtttgccatagagaagaaattg |
128 |
Q |
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| T |
2766461 |
cgttgaagtttgccatagaaaagaaattg |
2766433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 181 - 234
Target Start/End: Complemental strand, 2766394 - 2766341
Alignment:
| Q |
181 |
cccactctcatattgttgcgcttaatttattcatgaaaatgctttatatccaag |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2766394 |
cccactctcatattgttgcgcttaatttattcatgaaaatgctttatatccaag |
2766341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 25567511 - 25567553
Alignment:
| Q |
1 |
aacaagattcagtctccatcatcactcaccaaacaatttgaaa |
43 |
Q |
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|||||| ||||||||||||||| |||||||||||| ||||||| |
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| T |
25567511 |
aacaaggttcagtctccatcataactcaccaaacagtttgaaa |
25567553 |
T |
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