View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14247_low_16 (Length: 240)
Name: NF14247_low_16
Description: NF14247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14247_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 41 - 202
Target Start/End: Original strand, 14764397 - 14764564
Alignment:
| Q |
41 |
tagcacttgcctcaaagtctttttcagat-----tccacctagacaatttctcttgaa-tgcccagacattccacacttccagtacgacatactatttgc |
134 |
Q |
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||||| |||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||| ||| |||| ||||||| |
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| T |
14764397 |
tagcatttgcctcaaagtctttttcagaaactgctccacctagacaatttctctttaaatgcccagacattccacacttccaacacggcatattatttgc |
14764496 |
T |
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| Q |
135 |
atggatcttcttcccattagccccacttccagttagcaacattgagcttgatgaagtgctttcatcac |
202 |
Q |
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| T |
14764497 |
atggatcttcttcccattagccccacttctagttaacaacattgaccttgatgaagtgctttcatcac |
14764564 |
T |
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Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 41 - 202
Target Start/End: Original strand, 43979170 - 43979336
Alignment:
| Q |
41 |
tagcacttgcctcaaagtctttttcagat-----tccacctagacaatttctcttgaatgcccagacattccacacttccagtacgacatactatttgca |
135 |
Q |
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|||||| |||||||||||||||||||||| ||||||| ||||||||||||| || ||||||||||| ||||||| |||||||| | |||||| |
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| T |
43979170 |
tagcacctgcctcaaagtctttttcagataatgctccacctggacaatttctctttaaatggtagacattccacgcttccagcacgacatattctttgca |
43979269 |
T |
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| Q |
136 |
tggatcttcttcccattagccccacttccagttagcaacattgagcttgatgaagtgctttcatcac |
202 |
Q |
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| T |
43979270 |
tggatcttcttcccattagccccacttatagctagcaacatcgagcttgatgaagtgctttcatcac |
43979336 |
T |
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Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 70 - 202
Target Start/End: Original strand, 33301613 - 33301746
Alignment:
| Q |
70 |
tccacctagacaatttctcttgaa-tgcccagacattccacacttccagtacgacatactatttgcatggatcttcttcccattagccccacttccagtt |
168 |
Q |
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|||| |||||||||||||||| || ||| |||| |||||||||||||| | | ||| | ||||||||| |||||||||||||||||||||||| |||| |
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| T |
33301613 |
tccatctagacaatttctctttaaatgctcagatattccacacttccaacatggtatattctttgcatgggtcttcttcccattagccccacttctagtt |
33301712 |
T |
|
| Q |
169 |
agcaacattgagcttgatgaagtgctttcatcac |
202 |
Q |
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| T |
33301713 |
aacaacattgagcttgatgaagtggtttcatcac |
33301746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 70 - 202
Target Start/End: Complemental strand, 6139339 - 6139206
Alignment:
| Q |
70 |
tccacctagacaatttctcttgaa-tgcccagacattccacacttccagtacgacatactatttgcatggatcttcttcccattagccccacttccagtt |
168 |
Q |
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||||||| ||||||||||||| || ||||||||| ||||||| ||||| |||| | | |||||||||||||||||||||||||||||||||| ||| |
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| T |
6139339 |
tccacctggacaatttctctttaaatgcccagactttccacatttccaacacgaaaaatcctttgcatggatcttcttcccattagccccacttctagtc |
6139240 |
T |
|
| Q |
169 |
agcaacattgagcttgatgaagtgctttcatcac |
202 |
Q |
| |
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| T |
6139239 |
aacaacattgagcctgatgaagtgctttcatcac |
6139206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 41 - 197
Target Start/End: Original strand, 392801 - 392963
Alignment:
| Q |
41 |
tagcacttgcctcaaagtctttttcaga-----ttccacctagacaatttctcttgaa-tgcccagacattccacacttccagtacgacatactatttgc |
134 |
Q |
| |
|
|||||||||||| | ||||||||| ||| |||||||| ||||||||||||| || || ||| | |||||||||||| | || ||||| | ||||| |
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| T |
392801 |
tagcacttgccttagagtcttttttagaaattgttccacctggacaatttctctttaaatgtccaaagattccacacttctaacacaacatattctttgc |
392900 |
T |
|
| Q |
135 |
atggatcttcttcccattagccccacttccagttagcaacattgagcttgatgaagtgctttc |
197 |
Q |
| |
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|| ||||||||| | |||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
392901 |
attgatcttctttctattagccccacttctagttaacaacattgagcttgatgaagtgctttc |
392963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 100 - 202
Target Start/End: Complemental strand, 31326707 - 31326605
Alignment:
| Q |
100 |
gacattccacacttccagtacgacatactatttgcatggatcttcttcccattagccccacttccagttagcaacattgagcttgatgaagtgctttcat |
199 |
Q |
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||||||||||||||||| ||| |||| | |||||| |||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
31326707 |
gacattccacacttccaacacgccatattctttgcaccgatcctcttcccattagccccacttttagttagcaacattaagcttgatgaagtgctttcat |
31326608 |
T |
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| Q |
200 |
cac |
202 |
Q |
| |
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||| |
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| T |
31326607 |
cac |
31326605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 78 - 202
Target Start/End: Original strand, 35428932 - 35429054
Alignment:
| Q |
78 |
gacaatttctcttgaa-tgcccagacattccacacttccagtacgacatactatttgcatggatcttcttcccattagccccacttccagttagcaacat |
176 |
Q |
| |
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||||||||||||| || ||||||||| ||||||||||||| |||| | | |||||||||||||||||||||||||| ||||||| | ||| |||||| |
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| T |
35428932 |
gacaatttctctttaaatgcccagactttccacacttccaacacgaaaaatcctttgcatggatcttcttcccattagctccacttctaattaacaacat |
35429031 |
T |
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| Q |
177 |
tgagcttgatgaagtgctttcatcac |
202 |
Q |
| |
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|||||||||| ||||||||||||| |
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| T |
35429032 |
tgagcttgat---gtgctttcatcac |
35429054 |
T |
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