View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14247_low_18 (Length: 213)
Name: NF14247_low_18
Description: NF14247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14247_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 38679505 - 38679437
Alignment:
| Q |
130 |
ctaaacaaaatcagtttagtcccattaaaatagaaacaattccactgttcaacaggaactaatatatac |
198 |
Q |
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| T |
38679505 |
ctaaacaaaatcagtttagtcccattaaaatagaaacaattccgctgttcaacaagaactaatatatac |
38679437 |
T |
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Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 38679634 - 38679587
Alignment:
| Q |
1 |
acgtgtaatattaaaatctatatcgaaaataaatgagtttaagctaga |
48 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38679634 |
acgtgtaatattaaaatctatatcgaaaataaatgagtttaagctaga |
38679587 |
T |
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