View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14247_low_6 (Length: 440)
Name: NF14247_low_6
Description: NF14247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14247_low_6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Original strand, 38366763 - 38367202
Alignment:
| Q |
1 |
atggaacagggactcactattatttgctcaaaaagaggaggagatgtgtttaagcacagtcacgcgagttggctccaaacaatggcgtctaatcctgaag |
100 |
Q |
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| T |
38366763 |
atggaacagggactcactattatttgctcaaaaagaggaggagatgtgtttaagcacagtcactcgagttggctccaaacaatggcgtctaatcctgaag |
38366862 |
T |
|
| Q |
101 |
caatccacttcaagtttgttcctatttcatcacttctcacaggaattcctggaagtggttatcttagtcatgcaatcaatttgtatttaagatgtaagaa |
200 |
Q |
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| T |
38366863 |
caatccacttcaagtttgttcctatttcatcacttctcacaggaattcctggaagtggctatcttagtcatgcaatcaatttgtatttaagatgtaagaa |
38366962 |
T |
|
| Q |
201 |
attcttctactactatttttatccatatccatctcattttctttcgattacaagctccaaataaaaacttatatatatgagttttgatgccatcattggt |
300 |
Q |
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| T |
38366963 |
attcttctactactatttttatccatatccatttcattttctttcgattataagctccaaataaaaacttatatatatgagttttgatgccatcatttgt |
38367062 |
T |
|
| Q |
301 |
tgtatatcttcaaaagaaaattatcatttatggtcacaagtacttcaattgattcacctgttcattgcagataagcctactcctgatgacttacaatact |
400 |
Q |
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| T |
38367063 |
tgtatatcttcaaaagaaaattatcatttatggtcacaagtacttcaattgattcacctgttcattgcagataagcctactcctgatgacttacaatact |
38367162 |
T |
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| Q |
401 |
tcttggagtttcaaattcccagggaatgggcacctatgtt |
440 |
Q |
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| T |
38367163 |
tcttggagtttcaaattcccagggaatgggcacctatgtt |
38367202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 2 - 188
Target Start/End: Complemental strand, 34887589 - 34887403
Alignment:
| Q |
2 |
tggaacagggactcactattatttgctcaaaaagaggaggagatgtgtttaagcacagtcacgcgagttggctccaaacaatggcgtctaatcctgaagc |
101 |
Q |
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|||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||| | | |||||| || ||| || | || ||||||||||| |
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| T |
34887589 |
tggaacagggcctcactattatttgctccaaaagaggaggagatgtgttcaagcacagtcactcaaattggcttcagacagtgccttcgaatcctgaagc |
34887490 |
T |
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| Q |
102 |
aatccacttcaagtttgttcctatttcatcacttctcacaggaattcctggaagtggttatcttagtcatgcaatcaatttgtattt |
188 |
Q |
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||| |||||||||||||| ||||| || ||||| || ||||||||||||||||| ||||| ||||||||||||||||| ||||| |
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| T |
34887489 |
gatcatattcaagtttgttccgatttcctcgcttctgactggaattcctggaagtggctatctcagtcatgcaatcaatttatattt |
34887403 |
T |
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