View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14247_low_8 (Length: 318)
Name: NF14247_low_8
Description: NF14247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14247_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 15 - 303
Target Start/End: Original strand, 35082415 - 35082703
Alignment:
| Q |
15 |
caaaggcattgtaaaatttatttaattgatgcacttaggtgcaattcataggttaatcctattgaagagcataaatccagagtgcatttatccactaagt |
114 |
Q |
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| T |
35082415 |
caaaggcattgtaaaatttatttaattgatgcacttaggtgcaattcataggttaatcctattgaagagcataaatccagagtgcatttatccactaagt |
35082514 |
T |
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| Q |
115 |
attgaacttcacatttcattaaaactgtaattgcatatggcagccatattagacaagatatatatcaagtagaagtaatattataattgattgatctttt |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
35082515 |
attgaacttcacatttcattaaaactgtaattgcatatggcagccatattagacaagatatatatcaagtagaagtaatatgataattgattgatctttt |
35082614 |
T |
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| Q |
215 |
cccaaatataatccaaatgaattgatactattggctcaaaattcatcagacattcaaggtccaaactgcaaagtagcctcagatgtagc |
303 |
Q |
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| T |
35082615 |
cccaaatataatccaaatgaattgatactattggctcaaaattcatcagacattcaaggtccaaactgcaaagtagcctcagatgtagc |
35082703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 251 - 303
Target Start/End: Original strand, 43195088 - 43195140
Alignment:
| Q |
251 |
caaaattcatcagacattcaaggtccaaactgcaaagtagcctcagatgtagc |
303 |
Q |
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||||||||||||||||| ||||||||||||||||||||| | |||||||||| |
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| T |
43195088 |
caaaattcatcagacatccaaggtccaaactgcaaagtaatcccagatgtagc |
43195140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 43194920 - 43194973
Alignment:
| Q |
76 |
ttgaagagcataaatccagagtgcatttatccactaagtattgaacttcacatt |
129 |
Q |
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||||| || |||||||||||||||| ||||||| | ||||||| |||||||||| |
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| T |
43194920 |
ttgaaaagaataaatccagagtgcaattatccattgagtattgcacttcacatt |
43194973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 232
Target Start/End: Original strand, 43195022 - 43195075
Alignment:
| Q |
179 |
tcaagtagaagtaatattataattgattgatcttttcccaaatataatccaaat |
232 |
Q |
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|||||||||| | ||| ||||||||||| ||||||||||||||||||| |||| |
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| T |
43195022 |
tcaagtagaaatgctatgataattgattggtcttttcccaaatataatctaaat |
43195075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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