View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14248_high_1 (Length: 590)

Name: NF14248_high_1
Description: NF14248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14248_high_1
NF14248_high_1
[»] chr7 (2 HSPs)
chr7 (50-575)||(18710458-18710988)
chr7 (146-226)||(25859006-25859086)
[»] chr2 (3 HSPs)
chr2 (149-225)||(38563191-38563267)
chr2 (146-225)||(25194468-25194546)
chr2 (146-207)||(17395176-17395236)
[»] chr8 (6 HSPs)
chr8 (146-226)||(8341330-8341410)
chr8 (149-220)||(7776760-7776830)
chr8 (149-220)||(7794887-7794957)
chr8 (149-220)||(7814176-7814246)
chr8 (163-227)||(6812734-6812798)
chr8 (163-217)||(44022268-44022322)
[»] chr4 (5 HSPs)
chr4 (146-226)||(53685526-53685606)
chr4 (146-225)||(9607069-9607148)
chr4 (163-217)||(31880165-31880219)
chr4 (335-365)||(38677131-38677161)
chr4 (146-190)||(979999-980043)
[»] chr6 (2 HSPs)
chr6 (146-206)||(30123689-30123749)
chr6 (146-225)||(2356794-2356873)
[»] chr5 (3 HSPs)
chr5 (146-226)||(35192713-35192793)
chr5 (159-222)||(38631378-38631441)
chr5 (159-210)||(8433068-8433119)
[»] chr3 (2 HSPs)
chr3 (146-226)||(53489236-53489316)
chr3 (146-208)||(2614485-2614547)
[»] chr1 (4 HSPs)
chr1 (146-213)||(48155971-48156038)
chr1 (163-217)||(24183895-24183949)
chr1 (332-365)||(32681707-32681740)
chr1 (146-190)||(52127841-52127885)
[»] scaffold0687 (1 HSPs)
scaffold0687 (149-220)||(7478-7548)
[»] scaffold0386 (1 HSPs)
scaffold0386 (146-221)||(15273-15348)
[»] scaffold0060 (1 HSPs)
scaffold0060 (146-213)||(34540-34607)


Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 50 - 575
Target Start/End: Original strand, 18710458 - 18710988
Alignment:
Q  50 aaagaacaatagctcatttaattgaaaataaataacaatataacatctgtaaccataaaaaataatcatgtaactacacnnnnnnn-ttcaaat-ctgat 147  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  |        |||| || |||||    
T  18710458 aaagaacagtagctcatttaattgaaaataaataacaatataacatctgtaaccataaaaaataataatgtaactatgcaaaaaaaattcatattctgat 18710557  T
Q  148 caataatatataaatacaacttcaaacaaatatctttatcaatattttaggttgttatttttcttagttagtacaaaggcnnnnnnnnnn--gttataat 245  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             ||||||||    
T  18710558 caataatataaaaatataacttcaaacaaatatctttatcaatattttaggttgttatttttcttagttagtacaaaggtaaaaaaaaaaaagttataat 18710657  T
Q  246 annnnnnnagaaaa-taatataatgttttgttgttagaaattgattattttacaaaataggtatgnnnnnnn-gtaattaaaagaacagctctgtgaata 343  Q
    |       |||||| |||||| |||||| |||||||||| ||||||| |||||||||||||||||        |||||||||||||||||||| ||||||    
T  18710658 attcttttagaaaaataatatgatgttt-gttgttagaacttgattactttacaaaataggtatgaaaaaaaagtaattaaaagaacagctctttgaata 18710756  T
Q  344 agcatgtggatgtggcttctttcaaacataaatttattaataagatataggttttcaatcagataaatattcaatattaataaaactctatatcatcaaa 443  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18710757 agcatgtggatgtggcttctttcaaacataaatttattaataagatataggttttcaatcagataaatattcaatattaataaaactctatatcatcaaa 18710856  T
Q  444 cacatgagttggctgagctgagtagcgtcagcttctgggtcttagacagaagggtataatacgaggtagattttacaaagcatcgaacacatcctactcc 543  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  18710857 cacatgagctggctgagctgagtagcgtcagcttctaggtcttagacagaagggtataatacgaggtagattttacaaagcagcaaacacatcctactcc 18710956  T
Q  544 taacagtggagggatcgcatgtcgctgcacct 575  Q
    ||||||||||||||||||||||||||||||||    
T  18710957 taacagtggagggatcgcatgtcgctgcacct 18710988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 146 - 226
Target Start/End: Complemental strand, 25859086 - 25859006
Alignment:
Q  146 atcaataatatataaatacaacttcaaacaaatatctttatcaatattttaggttgttatttttcttagttagtacaaagg 226  Q
    |||||||||||| |||||||||||||||| |||||| |||||||| ||  ||| ||||||||| |||| || |||||||||    
T  25859086 atcaataatataaaaatacaacttcaaacgaatatcattatcaattttccagggtgttattttccttaatttgtacaaagg 25859006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 149 - 225
Target Start/End: Complemental strand, 38563267 - 38563191
Alignment:
Q  149 aataatatataaatacaacttcaaacaaatatctttatcaatattttaggttgttatttttcttagttagtacaaag 225  Q
    ||||||||| ||||||||||| || ||||||| ||||||||| |||||||||||||||||||||| || ||||||||    
T  38563267 aataatataaaaatacaactttaagcaaatatttttatcaatcttttaggttgttatttttcttaatttgtacaaag 38563191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 225
Target Start/End: Complemental strand, 25194546 - 25194468
Alignment:
Q  146 atcaataatatataaatacaacttcaaacaaatatctttatcaatattttaggttgttatttttcttagttagtacaaag 225  Q
    |||||||||||| |||||||| ||||| | ||||||||||||||| || |||||| |  |||| ||||||| ||||||||    
T  25194546 atcaataatataaaaatacaa-ttcaagcgaatatctttatcaatcttctaggttatatttttccttagtttgtacaaag 25194468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 207
Target Start/End: Complemental strand, 17395236 - 17395176
Alignment:
Q  146 atcaataatatataaatacaacttcaaacaaatatctttatcaatattttaggttgttattt 207  Q
    |||||||||||| |||||||||||||| | ||||| |||||| || || |||||||||||||    
T  17395236 atcaataatataaaaatacaacttcaagcgaatat-tttatctatcttctaggttgttattt 17395176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 146 - 226
Target Start/End: Original strand, 8341330 - 8341410
Alignment:
Q  146 atcaataatatataaatacaacttcaaacaaatatctttatcaatattttaggttgttatttttcttagttagtacaaagg 226  Q
    |||||||||||| |||||||||||||||| |||||| |||||||| || |||| ||||||||| |||| || |||||||||    
T  8341330 atcaataatataaaaatacaacttcaaacgaatatcattatcaattttctagggtgttattttccttaatttgtacaaagg 8341410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 149 - 220
Target Start/End: Complemental strand, 7776830 - 7776760
Alignment:
Q  149 aataatatataaatacaacttcaaacaaatatctttatcaatattttaggttgttatttttcttagttagta 220  Q
    ||||||||| |||||||||||||||  |||||  ||||||  |||||||||||||||||||||||| |||||    
T  7776830 aataatataaaaatacaacttcaaaagaatattcttatcac-attttaggttgttatttttcttaggtagta 7776760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 149 - 220
Target Start/End: Complemental strand, 7794957 - 7794887
Alignment:
Q  149 aataatatataaatacaacttcaaacaaatatctttatcaatattttaggttgttatttttcttagttagta 220  Q
    ||||||||| |||||||||||||||  |||||  ||||||  |||||||||||||||||||||||| |||||    
T  7794957 aataatataaaaatacaacttcaaaagaatattcttatcac-attttaggttgttatttttcttaggtagta 7794887  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 149 - 220
Target Start/End: Complemental strand, 7814246 - 7814176
Alignment:
Q  149 aataatatataaatacaacttcaaacaaatatctttatcaatattttaggttgttatttttcttagttagta 220  Q
    ||||||||| |||||||||||||||  |||||  ||||||  |||||||||||||||||||||||| |||||    
T  7814246 aataatataaaaatacaacttcaaaagaatattcttatcac-attttaggttgttatttttcttaggtagta 7814176  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 227
Target Start/End: Complemental strand, 6812798 - 6812734
Alignment:
Q  163 acaacttcaaacaaatatctttatcaatattttaggttgttatttttcttagttagtacaaaggc 227  Q
    ||||||| |||  ||||||||||||||| || || ||||||||||||||||||| ||||| ||||    
T  6812798 acaactttaaatgaatatctttatcaattttctaagttgttatttttcttagtttgtacagaggc 6812734  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 163 - 217
Target Start/End: Complemental strand, 44022322 - 44022268
Alignment:
Q  163 acaacttcaaacaaatatctttatcaatattttaggttgttatttttcttagtta 217  Q
    |||||||||| | ||||||||||||||| ||||||||||||| ||| | ||||||    
T  44022322 acaacttcaagctaatatctttatcaatcttttaggttgttaatttccctagtta 44022268  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 146 - 226
Target Start/End: Original strand, 53685526 - 53685606
Alignment:
Q  146 atcaataatatataaatacaacttcaaacaaatatctttatcaatattttaggttgttatttttcttagttagtacaaagg 226  Q
    |||||||||||| |||||||||||||||| |||||| |||||||| || |||| ||||||||| |||| || |||||||||    
T  53685526 atcaataatataaaaatacaacttcaaacgaatatcattatcaattttctagggtgttattttccttaatttgtacaaagg 53685606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 146 - 225
Target Start/End: Complemental strand, 9607148 - 9607069
Alignment:
Q  146 atcaataatatataaatacaacttcaaacaaatatctttatcaatattttaggttgttatttttcttagttagtacaaag 225  Q
    |||||||||||| |||||||||||||||| || ||| |||||||| || |||| ||||||||| |||| || ||||||||    
T  9607148 atcaataatataaaaatacaacttcaaacgaacatcattatcaattttctagggtgttattttccttaatttgtacaaag 9607069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 163 - 217
Target Start/End: Original strand, 31880165 - 31880219
Alignment:
Q  163 acaacttcaaacaaatatctttatcaatattttaggttgttatttttcttagtta 217  Q
    |||||||||| | ||||||||||||||| ||||||||||||| ||| | ||||||    
T  31880165 acaacttcaagctaatatctttatcaatcttttaggttgttaatttccctagtta 31880219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 335 - 365
Target Start/End: Complemental strand, 38677161 - 38677131
Alignment:
Q  335 ctgtgaataagcatgtggatgtggcttcttt 365  Q
    |||||||||||||||||||||||||||||||    
T  38677161 ctgtgaataagcatgtggatgtggcttcttt 38677131  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 980043 - 979999
Alignment:
Q  146 atcaataatatataaatacaacttcaaacaaatatctttatcaat 190  Q
    |||||||||||| ||||||||||| |||| ||||| |||||||||    
T  980043 atcaataatataaaaatacaactttaaacgaatatatttatcaat 979999  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 146 - 206
Target Start/End: Original strand, 30123689 - 30123749
Alignment:
Q  146 atcaataatatataaatacaacttcaaacaaatatctttatcaatattttaggttgttatt 206  Q
    |||||||||||| |||||||||||||| | ||||||||||||||| || ||||||||||||    
T  30123689 atcaataatataaaaatacaacttcaagcgaatatctttatcaattttctaggttgttatt 30123749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 146 - 225
Target Start/End: Original strand, 2356794 - 2356873
Alignment:
Q  146 atcaataatatataaatacaacttcaaacaaatatctttatcaatattttaggttgttatttttcttagttagtacaaag 225  Q
    |||||||||||| |||||||||||||||| || ||| |||||||| || |||| ||||||||| |||| || ||||||||    
T  2356794 atcaataatataaaaatacaacttcaaacgaacatcattatcaattttctagggtgttattttccttaatttgtacaaag 2356873  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 146 - 226
Target Start/End: Complemental strand, 35192793 - 35192713
Alignment:
Q  146 atcaataatatataaatacaacttcaaacaaatatctttatcaatattttaggttgttatttttcttagttagtacaaagg 226  Q
    |||||||||||| |||||||||||||| | ||||||||||||||| || |||| ||||||| | |||| || |||||||||    
T  35192793 atcaataatataaaaatacaacttcaagcgaatatctttatcaattttctaggctgttattatccttaatttgtacaaagg 35192713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 159 - 222
Target Start/End: Original strand, 38631378 - 38631441
Alignment:
Q  159 aaatacaacttcaaacaaatatctttatcaatattttaggttgttatttttcttagttagtaca 222  Q
    |||||||||||||||| |||| ||||||||| ||||||||||||||||||  |||||| |||||    
T  38631378 aaatacaacttcaaacgaataactttatcaaaattttaggttgttattttctttagtttgtaca 38631441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 210
Target Start/End: Original strand, 8433068 - 8433119
Alignment:
Q  159 aaatacaacttcaaacaaatatctttatcaatattttaggttgttatttttc 210  Q
    |||||||||||||| | ||||||||||||||| || |||||||||| |||||    
T  8433068 aaatacaacttcaagctaatatctttatcaatcttctaggttgttaattttc 8433119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 146 - 226
Target Start/End: Original strand, 53489236 - 53489316
Alignment:
Q  146 atcaataatatataaatacaacttcaaacaaatatctttatcaatattttaggttgttatttttcttagttagtacaaagg 226  Q
    |||||||||||| |||||||||||||||| |||||| |||||||| || || | ||||||||| |||| || |||||||||    
T  53489236 atcaataatataaaaatacaacttcaaacgaatatcattatcaattttctaaggtgttattttccttaatttgtacaaagg 53489316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 208
Target Start/End: Complemental strand, 2614547 - 2614485
Alignment:
Q  146 atcaataatatataaatacaacttcaaacaaatatctttatcaatattttaggttgttatttt 208  Q
    |||||||| ||| ||||||||| |||| | |||| |||||||||| || ||||||||||||||    
T  2614547 atcaataaaataaaaatacaacatcaagctaatagctttatcaatcttctaggttgttatttt 2614485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 146 - 213
Target Start/End: Complemental strand, 48156038 - 48155971
Alignment:
Q  146 atcaataatatataaatacaacttcaaacaaatatctttatcaatattttaggttgttatttttctta 213  Q
    |||||||||||| |||||||||||||||| ||||| |||||  | |||||| ||||||||||||||||    
T  48156038 atcaataatataaaaatacaacttcaaacgaatatttttattgacattttacgttgttatttttctta 48155971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 163 - 217
Target Start/End: Original strand, 24183895 - 24183949
Alignment:
Q  163 acaacttcaaacaaatatctttatcaatattttaggttgttatttttcttagtta 217  Q
    |||||||||| | ||||||||||||||| ||||||||||||| ||| | ||||||    
T  24183895 acaacttcaagctaatatctttatcaatcttttaggttgttaatttccctagtta 24183949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 365
Target Start/End: Original strand, 32681707 - 32681740
Alignment:
Q  332 gctctgtgaataagcatgtggatgtggcttcttt 365  Q
    ||||||||||||||| ||||||||||||||||||    
T  32681707 gctctgtgaataagcctgtggatgtggcttcttt 32681740  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 52127841 - 52127885
Alignment:
Q  146 atcaataatatataaatacaacttcaaacaaatatctttatcaat 190  Q
    |||||||||||| ||||||||||| |||| ||||| |||||||||    
T  52127841 atcaataatataaaaatacaactttaaacgaatatatttatcaat 52127885  T

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Target: scaffold0687 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 149 - 220
Target Start/End: Original strand, 7478 - 7548
Alignment:
Q  149 aataatatataaatacaacttcaaacaaatatctttatcaatattttaggttgttatttttcttagttagta 220  Q
    ||||||||| |||||||||||||||  |||||  ||||||  |||||||||||||||||||||||| |||||    
T  7478 aataatataaaaatacaacttcaaaagaatattcttatcac-attttaggttgttatttttcttaggtagta 7548  T

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Target: scaffold0386 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 146 - 221
Target Start/End: Complemental strand, 15348 - 15273
Alignment:
Q  146 atcaataatatataaatacaacttcaaacaaatatctttatcaatattttaggttgttatttttcttagttagtac 221  Q
    |||||||||||| |||||  ||||| ||| |||| ||||||||| |||||||||| ||||||| ||||||| ||||    
T  15348 atcaataatataaaaatattacttcgaacgaatacctttatcaacattttaggttattattttccttagtttgtac 15273  T

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Target: scaffold0060 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 146 - 213
Target Start/End: Complemental strand, 34607 - 34540
Alignment:
Q  146 atcaataatatataaatacaacttcaaacaaatatctttatcaatattttaggttgttatttttctta 213  Q
    |||||||||||| |||||||||||||||| || ||| |||||||| || |||| ||||||||| ||||    
T  34607 atcaataatataaaaatacaacttcaaacgaacatcattatcaattttctagggtgttattttcctta 34540  T

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