View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14248_high_13 (Length: 274)

Name: NF14248_high_13
Description: NF14248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14248_high_13
NF14248_high_13
[»] chr2 (18 HSPs)
chr2 (15-150)||(15147742-15147875)
chr2 (33-78)||(4587929-4587974)
chr2 (34-78)||(6763909-6763953)
chr2 (34-78)||(11175975-11176019)
chr2 (34-78)||(25298993-25299037)
chr2 (35-78)||(22191114-22191157)
chr2 (34-76)||(2986756-2986798)
chr2 (33-78)||(331780-331825)
chr2 (34-135)||(38716204-38716305)
chr2 (34-78)||(9051219-9051263)
chr2 (34-78)||(9787627-9787671)
chr2 (34-78)||(15735132-15735176)
chr2 (34-78)||(18538020-18538064)
chr2 (34-78)||(30714466-30714510)
chr2 (33-64)||(2190614-2190645)
chr2 (33-76)||(12350083-12350126)
chr2 (33-70)||(15700823-15700860)
chr2 (33-65)||(36464353-36464385)
[»] chr6 (23 HSPs)
chr6 (34-78)||(4597597-4597641)
chr6 (33-147)||(4370896-4371011)
chr6 (29-78)||(12427299-12427348)
chr6 (33-78)||(18791425-18791470)
chr6 (33-78)||(22968345-22968390)
chr6 (33-78)||(23820003-23820048)
chr6 (34-78)||(15298553-15298597)
chr6 (34-78)||(18749320-18749364)
chr6 (34-78)||(24051076-24051120)
chr6 (34-78)||(24603429-24603473)
chr6 (34-78)||(34833993-34834037)
chr6 (15-78)||(20863870-20863933)
chr6 (15-65)||(23124862-23124912)
chr6 (33-78)||(3118747-3118792)
chr6 (33-66)||(4013858-4013891)
chr6 (34-78)||(26710499-26710543)
chr6 (33-76)||(26240025-26240068)
chr6 (17-63)||(19176491-19176537)
chr6 (34-76)||(31210864-31210906)
chr6 (33-78)||(8412826-8412871)
chr6 (34-67)||(35102683-35102716)
chr6 (34-78)||(32451794-32451838)
chr6 (34-66)||(32682470-32682502)
[»] chr4 (24 HSPs)
chr4 (14-78)||(25618768-25618832)
chr4 (33-78)||(4433374-4433419)
chr4 (31-76)||(9195852-9195897)
chr4 (33-78)||(25011803-25011848)
chr4 (33-78)||(55780455-55780500)
chr4 (33-78)||(55844635-55844680)
chr4 (34-78)||(13397867-13397911)
chr4 (34-78)||(15059010-15059054)
chr4 (34-78)||(41877218-41877262)
chr4 (34-75)||(2931392-2931433)
chr4 (34-78)||(43793823-43793867)
chr4 (34-78)||(52838297-52838340)
chr4 (33-76)||(4098726-4098769)
chr4 (28-63)||(7540245-7540280)
chr4 (33-75)||(1588603-1588645)
chr4 (33-78)||(9397259-9397304)
chr4 (15-63)||(14612279-14612328)
chr4 (34-78)||(4357320-4357364)
chr4 (34-66)||(5304539-5304571)
chr4 (34-78)||(6789150-6789194)
chr4 (28-64)||(14804432-14804468)
chr4 (33-61)||(20919523-20919551)
chr4 (33-61)||(27018299-27018327)
chr4 (34-78)||(45633505-45633549)
[»] chr1 (21 HSPs)
chr1 (31-78)||(43706842-43706889)
chr1 (33-78)||(16551835-16551880)
chr1 (33-78)||(46432407-46432452)
chr1 (34-78)||(24749866-24749910)
chr1 (34-78)||(24962021-24962065)
chr1 (34-78)||(28920843-28920887)
chr1 (34-78)||(48472055-48472099)
chr1 (33-76)||(21148048-21148091)
chr1 (35-78)||(22786098-22786141)
chr1 (92-150)||(1074930-1074988)
chr1 (33-75)||(18606875-18606917)
chr1 (34-78)||(3616867-3616911)
chr1 (34-78)||(4059714-4059758)
chr1 (36-78)||(51719315-51719357)
chr1 (33-66)||(9387772-9387805)
chr1 (34-78)||(2657704-2657748)
chr1 (34-66)||(19078117-19078149)
chr1 (34-66)||(19126007-19126039)
chr1 (33-65)||(21185286-21185318)
chr1 (34-78)||(24196329-24196373)
chr1 (33-77)||(28750346-28750390)
[»] chr3 (33 HSPs)
chr3 (15-65)||(3820994-3821044)
chr3 (33-78)||(23428810-23428855)
chr3 (33-78)||(25022854-25022899)
chr3 (34-78)||(8542678-8542722)
chr3 (33-77)||(20001778-20001822)
chr3 (34-78)||(26628217-26628261)
chr3 (34-78)||(27852943-27852987)
chr3 (34-78)||(48907484-48907528)
chr3 (34-77)||(25179647-25179690)
chr3 (15-78)||(32960784-32960846)
chr3 (36-70)||(33105017-33105051)
chr3 (33-78)||(28173920-28173965)
chr3 (33-78)||(35201185-35201230)
chr3 (33-65)||(3780960-3780992)
chr3 (34-78)||(13080962-13081006)
chr3 (34-78)||(22447936-22447980)
chr3 (34-78)||(22500787-22500831)
chr3 (97-145)||(26127159-26127207)
chr3 (34-78)||(30155337-30155381)
chr3 (34-77)||(4522023-4522066)
chr3 (33-64)||(23320443-23320474)
chr3 (35-78)||(46673240-46673283)
chr3 (33-78)||(26633549-26633592)
chr3 (34-75)||(3329005-3329046)
chr3 (33-66)||(4775930-4775963)
chr3 (33-62)||(9496408-9496437)
chr3 (33-66)||(18388891-18388924)
chr3 (34-78)||(22416400-22416445)
chr3 (34-75)||(48860773-48860814)
chr3 (34-78)||(8339132-8339176)
chr3 (15-51)||(22416460-22416496)
chr3 (97-145)||(26177209-26177257)
chr3 (33-65)||(40836370-40836402)
[»] chr8 (17 HSPs)
chr8 (33-78)||(21666465-21666510)
chr8 (34-78)||(12723453-12723497)
chr8 (34-78)||(17648311-17648355)
chr8 (34-78)||(19391579-19391623)
chr8 (36-78)||(4519061-4519103)
chr8 (33-65)||(1824686-1824718)
chr8 (33-65)||(1859131-1859163)
chr8 (34-78)||(5192463-5192507)
chr8 (34-78)||(8802591-8802635)
chr8 (34-78)||(30784456-30784500)
chr8 (31-78)||(31268347-31268394)
chr8 (34-77)||(33895443-33895486)
chr8 (37-70)||(3380274-3380307)
chr8 (32-65)||(7117305-7117338)
chr8 (34-75)||(38630126-38630167)
chr8 (34-78)||(19924333-19924377)
chr8 (34-66)||(21929995-21930027)
[»] chr5 (28 HSPs)
chr5 (33-78)||(25557066-25557111)
chr5 (33-78)||(31055505-31055550)
chr5 (34-78)||(8645865-8645909)
chr5 (34-78)||(10293279-10293323)
chr5 (33-77)||(16307668-16307712)
chr5 (15-60)||(8673998-8674043)
chr5 (34-78)||(26639229-26639273)
chr5 (34-78)||(38408697-38408741)
chr5 (33-65)||(41663715-41663747)
chr5 (34-77)||(37961441-37961484)
chr5 (31-61)||(7835795-7835825)
chr5 (34-64)||(23040143-23040173)
chr5 (33-75)||(38476661-38476703)
chr5 (17-63)||(38545421-38545467)
chr5 (31-64)||(17704775-17704808)
chr5 (33-62)||(17825688-17825717)
chr5 (15-63)||(18739829-18739878)
chr5 (33-62)||(20653904-20653933)
chr5 (33-78)||(31648123-31648168)
chr5 (33-66)||(35302106-35302139)
chr5 (34-66)||(245674-245706)
chr5 (33-77)||(10379351-10379395)
chr5 (34-66)||(16901189-16901221)
chr5 (34-66)||(18695083-18695115)
chr5 (33-65)||(23040231-23040263)
chr5 (34-66)||(23765582-23765614)
chr5 (34-66)||(23815430-23815462)
chr5 (34-78)||(36641211-36641255)
[»] scaffold0607 (1 HSPs)
scaffold0607 (34-78)||(2241-2285)
[»] scaffold0179 (1 HSPs)
scaffold0179 (34-78)||(5841-5885)
[»] chr7 (28 HSPs)
chr7 (34-78)||(2331081-2331125)
chr7 (34-78)||(20636687-20636731)
chr7 (34-78)||(20638559-20638603)
chr7 (34-78)||(21224544-21224588)
chr7 (34-78)||(27869387-27869431)
chr7 (34-78)||(35337714-35337758)
chr7 (34-78)||(42271400-42271444)
chr7 (33-78)||(11843368-11843413)
chr7 (34-78)||(39182005-39182047)
chr7 (34-78)||(8526864-8526908)
chr7 (34-78)||(19195405-19195449)
chr7 (34-78)||(24597707-24597751)
chr7 (33-68)||(10023975-10024010)
chr7 (38-77)||(10655399-10655438)
chr7 (17-60)||(14196968-14197011)
chr7 (15-65)||(6650622-6650672)
chr7 (33-78)||(25002777-25002820)
chr7 (33-62)||(6798105-6798134)
chr7 (33-62)||(15681681-15681710)
chr7 (33-78)||(18754457-18754502)
chr7 (33-78)||(21225738-21225783)
chr7 (33-78)||(26385329-26385374)
chr7 (33-66)||(31493990-31494023)
chr7 (33-78)||(48176153-48176198)
chr7 (34-66)||(3562625-3562657)
chr7 (33-65)||(24464656-24464688)
chr7 (34-78)||(36746695-36746739)
chr7 (34-62)||(44078063-44078091)
[»] scaffold0025 (2 HSPs)
scaffold0025 (35-78)||(61882-61925)
scaffold0025 (33-66)||(19363-19396)
[»] scaffold0002 (1 HSPs)
scaffold0002 (33-76)||(455000-455043)
[»] scaffold1202 (1 HSPs)
scaffold1202 (33-135)||(1965-2067)
[»] scaffold0087 (1 HSPs)
scaffold0087 (33-75)||(25155-25197)
[»] scaffold0419 (1 HSPs)
scaffold0419 (34-78)||(3152-3196)
[»] scaffold0267 (1 HSPs)
scaffold0267 (33-65)||(3759-3791)
[»] scaffold0291 (1 HSPs)
scaffold0291 (31-62)||(10005-10036)
[»] scaffold0050 (1 HSPs)
scaffold0050 (96-147)||(81016-81067)
[»] scaffold0064 (1 HSPs)
scaffold0064 (15-60)||(54487-54532)
[»] scaffold0062 (2 HSPs)
scaffold0062 (33-70)||(49735-49772)
scaffold0062 (33-70)||(62274-62311)
[»] scaffold0005 (2 HSPs)
scaffold0005 (15-63)||(205049-205098)
scaffold0005 (28-64)||(35259-35295)
[»] scaffold0001 (1 HSPs)
scaffold0001 (34-66)||(142139-142171)


Alignment Details
Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 15 - 150
Target Start/End: Complemental strand, 15147875 - 15147742
Alignment:
Q  15 actttttgttaaaataatgggtcaaaagagcatatttccctaaacatggggggtcatttttgccnnnnnnnnaataagggatcaaaaccgctactttttc 114  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||| |||||||        |||||| |||||||||||||||||||||    
T  15147875 actttttgttaagataatggatcaaaagagcatatttccctaaacatggggg-tcacttttgccttttttt-aataagcgatcaaaaccgctactttttc 15147778  T
Q  115 aaacttaaagggtgaatagtgcgattaagcctattt 150  Q
    ||||||| |||||||||| |||||||||||||||||    
T  15147777 aaacttagagggtgaataatgcgattaagcctattt 15147742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 4587974 - 4587929
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||    
T  4587974 gggtcaaaagagcatatttccctaaacatagggggtcacttttgcc 4587929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 6763909 - 6763953
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||||||||||||||||||||||| |||||||| |||||||    
T  6763909 ggtcaaaagagcatatttccctaaacatagggggtcacttttgcc 6763953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 11176019 - 11175975
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||||||||||||||||||||||| |||||||| |||||||    
T  11176019 ggtcaaaagagcatatttccctaaacatagggggtcacttttgcc 11175975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 25298993 - 25299037
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||||||||||||||||||||||| |||||||| |||||||    
T  25298993 ggtcaaaagagcatatttccctaaacatagggggtcacttttgcc 25299037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 78
Target Start/End: Complemental strand, 22191157 - 22191114
Alignment:
Q  35 gtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    ||||||||||||||||||||||||||| |||||||| |||||||    
T  22191157 gtcaaaagagcatatttccctaaacatagggggtcacttttgcc 22191114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 76
Target Start/End: Complemental strand, 2986798 - 2986756
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttg 76  Q
    |||||||||||||||||||||||||||| |||||||| |||||    
T  2986798 ggtcaaaagagcatatttccctaaacatagggggtcacttttg 2986756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 331825 - 331780
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||||||||||||||||||||||||||  ||||| |||||||    
T  331825 gggtcaaaagagcatatttccctaaacatggaaggtcacttttgcc 331780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 135
Target Start/End: Complemental strand, 38716305 - 38716204
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgccnnnnnnnnaataagggatcaaaaccgctactttttcaaacttaaagggtgaatag 133  Q
    ||||||||||||||||||||||||||||  ||||||| |||||||        |||| ||| |||||| ||| || |||| ||||||| |||||||| ||    
T  38716305 ggtcaaaagagcatatttccctaaacatatggggtcacttttgccatttttttaatagggggtcaaaatcgcaacattttaaaacttagagggtgaaaag 38716206  T
Q  134 tg 135  Q
    ||    
T  38716205 tg 38716204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 9051219 - 9051263
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||||||||||||||||||||||| ||| |||| |||||||    
T  9051219 ggtcaaaagagcatatttccctaaacatagggagtcacttttgcc 9051263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 9787671 - 9787627
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||||||||||||||||||||||| | |||||| |||||||    
T  9787671 ggtcaaaagagcatatttccctaaacatagtgggtcacttttgcc 9787627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 15735176 - 15735132
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    ||||||||||||||||||||| |||||| |||||||| |||||||    
T  15735176 ggtcaaaagagcatatttcccaaaacatagggggtcacttttgcc 15735132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 18538020 - 18538064
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||| ||||||||||||||||||| |||||||| |||||||    
T  18538020 ggtcaaaaaagcatatttccctaaacatagggggtcacttttgcc 18538064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 30714466 - 30714510
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    ||||||||||||||||||||| |||||| |||||||| |||||||    
T  30714466 ggtcaaaagagcatatttcccgaaacatagggggtcacttttgcc 30714510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 64
Target Start/End: Complemental strand, 2190645 - 2190614
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggg 64  Q
    ||||||||||||||||||||||||||||||||    
T  2190645 gggtcaaaagagcatatttccctaaacatggg 2190614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 12350126 - 12350083
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggggggtcatttttg 76  Q
    ||||||||||||||||||||||||||  ||| ||||||||||||    
T  12350126 gggtcaaaagagcatatttccctaaatttggagggtcatttttg 12350083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 15700860 - 15700823
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggggggtca 70  Q
    |||||||||||||||||||||| |||||| ||||||||    
T  15700860 gggtcaaaagagcatatttcccgaaacatagggggtca 15700823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 36464385 - 36464353
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatgggg 65  Q
    ||||||||||| |||||||||||||||||||||    
T  36464385 gggtcaaaagatcatatttccctaaacatgggg 36464353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 4597597 - 4597641
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  4597597 ggtcaaaagagcatatttccctaaacatagggggtcatttttgcc 4597641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 147
Target Start/End: Complemental strand, 4371011 - 4370896
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggggggtcatttttgccnnnnnnnnaataagg-gatcaaaaccgctactttttcaaacttaaagggtgaat 131  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||         | |||| |  ||||| |||||||||| ||||||||  ||||||||    
T  4371011 gggtcaaaagagcatatttccctaaacatggagggtcacttttgccattttttttaaaaggaggccaaaatcgctacttttgcaaacttagggggtgaat 4370912  T
Q  132 agtgcgattaagccta 147  Q
    |||||| |||||||||    
T  4370911 agtgcgtttaagccta 4370896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 78
Target Start/End: Complemental strand, 12427348 - 12427299
Alignment:
Q  29 taatgggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||| ||||||||||||||||||||||||||||||| ||| |||||||    
T  12427348 taatggttcaaaagagcatatttccctaaacatgggggatcacttttgcc 12427299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 18791470 - 18791425
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||    
T  18791470 gggtcaaaagagcatatttccctaaacatagggggtcacttttgcc 18791425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 22968345 - 22968390
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||    
T  22968345 gggtcaaaagagcatatttccctaaacatagggggtcacttttgcc 22968390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 23820048 - 23820003
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||    
T  23820048 gggtcaaaagagcatatttccctaaacatagggggtcacttttgcc 23820003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 15298597 - 15298553
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||||||||||||||||||||||| |||||||| |||||||    
T  15298597 ggtcaaaagagcatatttccctaaacatagggggtcacttttgcc 15298553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 18749320 - 18749364
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||||||||||||||||||||||| |||||||| |||||||    
T  18749320 ggtcaaaagagcatatttccctaaacatagggggtcacttttgcc 18749364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 24051120 - 24051076
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||||||||||||||||||||||| |||||||| |||||||    
T  24051120 ggtcaaaagagcatatttccctaaacatagggggtcacttttgcc 24051076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 24603473 - 24603429
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||||||||||||||||||||||| |||||||| |||||||    
T  24603473 ggtcaaaagagcatatttccctaaacatagggggtcacttttgcc 24603429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 34834037 - 34833993
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||||||||||||||||||||||| |||||||| |||||||    
T  34834037 ggtcaaaagagcatatttccctaaacatagggggtcacttttgcc 34833993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 20863870 - 20863933
Alignment:
Q  15 actttttgttaaaataatgggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    ||||||||| || |||| |||||||||||||||| || |||||||||||| ||||| |||||||    
T  20863870 actttttgtaaagataaggggtcaaaagagcataatttcctaaacatgggaggtcacttttgcc 20863933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 23124862 - 23124912
Alignment:
Q  15 actttttgttaaaataatgggtcaaaagagcatatttccctaaacatgggg 65  Q
    ||||||||| || |||| ||||||||||||||||||| |||||||||||||    
T  23124862 actttttgtaaagataaggggtcaaaagagcatattttcctaaacatgggg 23124912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 3118792 - 3118747
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    ||||||||||||||||||||||||||||| | |||||| |||||||    
T  3118792 gggtcaaaagagcatatttccctaaacatagagggtcacttttgcc 3118747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 4013858 - 4013891
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggggg 66  Q
    ||||||||||||||||||||||||||||||||||    
T  4013858 gggtcaaaagagcatatttccctaaacatggggg 4013891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 26710499 - 26710543
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||||||||||||||||||||||| |||||||  |||||||    
T  26710499 ggtcaaaagagcatatttccctaaacatagggggtcgcttttgcc 26710543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 26240068 - 26240025
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggggggtcatttttg 76  Q
    ||||||||||||||||||||| |||||||| ||||||| |||||    
T  26240068 gggtcaaaagagcatatttccgtaaacatgaggggtcacttttg 26240025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 19176537 - 19176491
Alignment:
Q  17 tttttgttaaaataatgggtcaaaagagcatatttccctaaacatgg 63  Q
    ||||||| || |||||| ||||||| |||||||||||||||||||||    
T  19176537 tttttgtaaagataatgtgtcaaaatagcatatttccctaaacatgg 19176491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 76
Target Start/End: Complemental strand, 31210906 - 31210864
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttg 76  Q
    |||||||||||||||||| ||||||||| |||||||| |||||    
T  31210906 ggtcaaaagagcatattttcctaaacatagggggtcacttttg 31210864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 8412871 - 8412826
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||||||||||||||| |||||||| |||||||  |||||||    
T  8412871 gggtcaaaagagcatatttctctaaacatagggggtcgcttttgcc 8412826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 67
Target Start/End: Original strand, 35102683 - 35102716
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatgggggg 67  Q
    |||||||||||||||||||||||||||| |||||    
T  35102683 ggtcaaaagagcatatttccctaaacataggggg 35102716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 32451838 - 32451794
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||||||||||||||  ||||||| |||||||| |||||||    
T  32451838 ggtcaaaagagcatatttctataaacatagggggtcacttttgcc 32451794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 32682470 - 32682502
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggg 66  Q
    |||||||||||||||||||||||||||| ||||    
T  32682470 ggtcaaaagagcatatttccctaaacatagggg 32682502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 25618768 - 25618832
Alignment:
Q  14 cactttttgttaaaataatgggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||||| || |||| ||||||||||||||||||||||||||| | |||||||| |||||||    
T  25618768 cactttttgtaaagataaggggtcaaaagagcatatttccctaaacttagggggtcacttttgcc 25618832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 4433374 - 4433419
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||    
T  4433374 gggtcaaaagagcatatttccctaaacatagggggtcacttttgcc 4433419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 9195852 - 9195897
Alignment:
Q  31 atgggtcaaaagagcatatttccctaaacatggggggtcatttttg 76  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||    
T  9195852 atgggtcaaaagagcatatttccctaaacatagggggtcacttttg 9195897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 25011848 - 25011803
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||    
T  25011848 gggtcaaaagagcatatttccctaaacatagggggtcacttttgcc 25011803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 55780500 - 55780455
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||    
T  55780500 gggtcaaaagagcatatttccctaaacatagggggtcacttttgcc 55780455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 55844680 - 55844635
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||    
T  55844680 gggtcaaaagagcatatttccctaaacatagggggtcacttttgcc 55844635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 13397867 - 13397911
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||||||||||||||||||||||| |||||||| |||||||    
T  13397867 ggtcaaaagagcatatttccctaaacatagggggtcacttttgcc 13397911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 15059010 - 15059054
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||||||||||||||||||||||| |||||||| |||||||    
T  15059010 ggtcaaaagagcatatttccctaaacatagggggtcacttttgcc 15059054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 41877218 - 41877262
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||||||||||||||||||||||| |||||||| |||||||    
T  41877218 ggtcaaaagagcatatttccctaaacatagggggtcacttttgcc 41877262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 2931433 - 2931392
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcattttt 75  Q
    |||||||||||||||||||||||||||| |||||||| ||||    
T  2931433 ggtcaaaagagcatatttccctaaacatagggggtcactttt 2931392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 43793823 - 43793867
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    ||||||||||||||||||||||||||||  ||||||| |||||||    
T  43793823 ggtcaaaagagcatatttccctaaacatatggggtcacttttgcc 43793867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 52838340 - 52838297
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||    
T  52838340 ggtcaaaagagcatatttcc-taaacatagggggtcatttttgcc 52838297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 4098769 - 4098726
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggggggtcatttttg 76  Q
    |||||||||||||||||||||| |||||| |||||||| |||||    
T  4098769 gggtcaaaagagcatatttcccaaaacatagggggtcacttttg 4098726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 63
Target Start/End: Original strand, 7540245 - 7540280
Alignment:
Q  28 ataatgggtcaaaagagcatatttccctaaacatgg 63  Q
    |||| |||||||||||||||||||||||||||||||    
T  7540245 ataaagggtcaaaagagcatatttccctaaacatgg 7540280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 1588603 - 1588645
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggggggtcattttt 75  Q
    ||||||||||||||||||||||||||||| || ||||| ||||    
T  1588603 gggtcaaaagagcatatttccctaaacataggaggtcactttt 1588645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 9397304 - 9397259
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||||||||||||||||||| ||||||| | ||| |||||||    
T  9397304 gggtcaaaagagcatatttccctatacatgggagatcacttttgcc 9397259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 14612279 - 14612328
Alignment:
Q  15 actttttgttaaa-ataatgggtcaaaagagcatatttccctaaacatgg 63  Q
    |||||||| |||| |||| ||| |||||||||||||||||||||||||||    
T  14612279 actttttggtaaagataaggggccaaaagagcatatttccctaaacatgg 14612328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 4357364 - 4357320
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    ||||||||||||||||||||||||| || ||| |||| |||||||    
T  4357364 ggtcaaaagagcatatttccctaaatatagggtgtcacttttgcc 4357320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 5304539 - 5304571
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggg 66  Q
    |||||||||||||||||||||||||||| ||||    
T  5304539 ggtcaaaagagcatatttccctaaacatagggg 5304571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 6789150 - 6789194
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||| ||| ||||||||||||||||||| |||||||| |||||||    
T  6789150 ggtcgaaacagcatatttccctaaacatagggggtcacttttgcc 6789194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 14804468 - 14804432
Alignment:
Q  28 ataatgggtcaaaagagcatatttccctaaacatggg 64  Q
    |||| |||||||||||| |||||||||||||||||||    
T  14804468 ataaggggtcaaaagagtatatttccctaaacatggg 14804432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 61
Target Start/End: Original strand, 20919523 - 20919551
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacat 61  Q
    |||||||||||||||||||||||||||||    
T  20919523 gggtcaaaagagcatatttccctaaacat 20919551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 61
Target Start/End: Complemental strand, 27018327 - 27018299
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacat 61  Q
    |||||||||||||||||||||||||||||    
T  27018327 gggtcaaaagagcatatttccctaaacat 27018299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 45633549 - 45633505
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||| ||||||||||||||||||||| ||| |||| |||||||    
T  45633549 ggtcaatagagcatatttccctaaacatagggagtcacttttgcc 45633505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 78
Target Start/End: Original strand, 43706842 - 43706889
Alignment:
Q  31 atgggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||    
T  43706842 atgggtcaaaagagcatatttccctaaacatagggggtcacttttgcc 43706889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 16551835 - 16551880
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||    
T  16551835 gggtcaaaagagcatatttccctaaacattgggggtcacttttgcc 16551880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 46432407 - 46432452
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||    
T  46432407 gggtcaaaagagcatatttccctaaacatagggggtcacttttgcc 46432452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 24749910 - 24749866
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||||||||||||||||||||||| |||||||| |||||||    
T  24749910 ggtcaaaagagcatatttccctaaacatagggggtcacttttgcc 24749866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 24962065 - 24962021
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||||||||||||||||||||||| |||||||| |||||||    
T  24962065 ggtcaaaagagcatatttccctaaacatagggggtcacttttgcc 24962021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 28920843 - 28920887
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||||||||||||||||||||||| |||||||| |||||||    
T  28920843 ggtcaaaagagcatatttccctaaacatagggggtcacttttgcc 28920887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 48472055 - 48472099
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||||||||||||||||||||||| |||||||| |||||||    
T  48472055 ggtcaaaagagcatatttccctaaacatagggggtcaattttgcc 48472099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 21148091 - 21148048
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggggggtcatttttg 76  Q
    ||||||||||||||||||||||||||||| |||||||| |||||    
T  21148091 gggtcaaaagagcatatttccctaaacatagggggtcacttttg 21148048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 78
Target Start/End: Complemental strand, 22786141 - 22786098
Alignment:
Q  35 gtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||||||||||||||||||||||||||| ||| |||||||    
T  22786141 gtcaaaagagcatatttccctaaacatgggggctcacttttgcc 22786098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 150
Target Start/End: Complemental strand, 1074988 - 1074930
Alignment:
Q  92 gggatcaaaaccgctactttttcaaacttaaagggtgaatagtgcgattaagcctattt 150  Q
    |||||||||| | |||||||| |||||||| ||||||||||||||  ||||||||||||    
T  1074988 gggatcaaaatcactacttttgcaaacttagagggtgaatagtgctcttaagcctattt 1074930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 18606875 - 18606917
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggggggtcattttt 75  Q
    |||||||||||||||||||||||||||||| ||||||| ||||    
T  18606875 gggtcaaaagagcatatttccctaaacatgaggggtcactttt 18606917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 3616911 - 3616867
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||||||||||||||||||||||| || ||||| |||||||    
T  3616911 ggtcaaaagagcatatttccctaaacataggaggtcacttttgcc 3616867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 4059714 - 4059758
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||||||||||||||||||||||| | |||||| |||||||    
T  4059714 ggtcaaaagagcatatttccctaaacatagagggtcacttttgcc 4059758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 78
Target Start/End: Original strand, 51719315 - 51719357
Alignment:
Q  36 tcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    ||||||||||||||||||||||||||  ||||||| |||||||    
T  51719315 tcaaaagagcatatttccctaaacataaggggtcacttttgcc 51719357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 9387805 - 9387772
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggggg 66  Q
    ||||||||||||||||||||| ||||||||||||    
T  9387805 gggtcaaaagagcatatttccttaaacatggggg 9387772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 2657704 - 2657748
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||| ||||||||||||||||||||| ||| |||| |||||||    
T  2657704 ggtcaatagagcatatttccctaaacatagggagtcacttttgcc 2657748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 19078117 - 19078149
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggg 66  Q
    |||||||||||||||||||||||||||| ||||    
T  19078117 ggtcaaaagagcatatttccctaaacatagggg 19078149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 19126007 - 19126039
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggg 66  Q
    |||||||||||||||||||||||||||| ||||    
T  19126007 ggtcaaaagagcatatttccctaaacatagggg 19126039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 21185318 - 21185286
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatgggg 65  Q
    ||||||||||| |||||||||||||||||||||    
T  21185318 gggtcaaaagaacatatttccctaaacatgggg 21185286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 24196373 - 24196329
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    ||||||||||||||||||| ||||||||  ||||||| |||||||    
T  24196373 ggtcaaaagagcatatttctctaaacatatggggtcacttttgcc 24196329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 28750390 - 28750346
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggggggtcatttttgc 77  Q
    |||||||||||||||||||  ||||||||| ||||||| ||||||    
T  28750390 gggtcaaaagagcatatttttctaaacatgaggggtcacttttgc 28750346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 3821044 - 3820994
Alignment:
Q  15 actttttgttaaaataatgggtcaaaagagcatatttccctaaacatgggg 65  Q
    ||||||||| || |||| |||||||||||||||||||||||||||||||||    
T  3821044 actttttgtaaagataaagggtcaaaagagcatatttccctaaacatgggg 3820994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 23428810 - 23428855
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||    
T  23428810 gggtcaaaagagcatatttccctaaacatagggggtcacttttgcc 23428855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 25022854 - 25022899
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||    
T  25022854 gggtcaaaagagcatatttccctaaacatagggggtcacttttgcc 25022899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 8542722 - 8542678
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||||||||||||||||||||||| |||||||| |||||||    
T  8542722 ggtcaaaagagcatatttccctaaacatagggggtcacttttgcc 8542678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 20001822 - 20001778
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggggggtcatttttgc 77  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||    
T  20001822 gggtcaaaagagcatatttccctaaacatagggggtcacttttgc 20001778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 26628217 - 26628261
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||||||||||||||||||||||| |||||||| |||||||    
T  26628217 ggtcaaaagagcatatttccctaaacatagggggtcacttttgcc 26628261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 27852943 - 27852987
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||||||||||||||||||||||| |||||||| |||||||    
T  27852943 ggtcaaaagagcatatttccctaaacatagggggtcacttttgcc 27852987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 48907484 - 48907528
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||||||||||||||||||||||| |||||||| |||||||    
T  48907484 ggtcaaaagagcatatttccctaaacatagggggtcacttttgcc 48907528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 77
Target Start/End: Complemental strand, 25179690 - 25179647
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgc 77  Q
    |||||||||||||||||||||||||||| |||||||| ||||||    
T  25179690 ggtcaaaagagcatatttccctaaacatagggggtcacttttgc 25179647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 32960784 - 32960846
Alignment:
Q  15 actttttgttaaaataatgggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    ||||||||| || |||| ||||||||| ||||||||||||||||||| |||||||| |||||||    
T  32960784 actttttgtaaagataaggggtcaaaa-agcatatttccctaaacatagggggtcacttttgcc 32960846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 70
Target Start/End: Complemental strand, 33105051 - 33105017
Alignment:
Q  36 tcaaaagagcatatttccctaaacatggggggtca 70  Q
    |||||||||||||||||||||||||||||||||||    
T  33105051 tcaaaagagcatatttccctaaacatggggggtca 33105017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 28173920 - 28173965
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    ||||||||||||||||||||||||||||| | || |||||||||||    
T  28173920 gggtcaaaagagcatatttccctaaacatagaggatcatttttgcc 28173965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 35201185 - 35201230
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    ||||||||||||||| |||||| ||||||| |||||||||||||||    
T  35201185 gggtcaaaagagcatgtttcccaaaacatgtggggtcatttttgcc 35201230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 3780992 - 3780960
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatgggg 65  Q
    |||||||||||||||||||||||||||||||||    
T  3780992 gggtcaaaagagcatatttccctaaacatgggg 3780960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 13081006 - 13080962
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    ||||||||||||||||||||||||| || |||||||| |||||||    
T  13081006 ggtcaaaagagcatatttccctaaatatagggggtcacttttgcc 13080962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 22447936 - 22447980
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||||||||||||||||||||||| || ||||| |||||||    
T  22447936 ggtcaaaagagcatatttccctaaacataggaggtcacttttgcc 22447980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 22500787 - 22500831
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||||||||||||| ||||||||| |||||||| |||||||    
T  22500787 ggtcaaaagagcatattttcctaaacatagggggtcacttttgcc 22500831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 26127159 - 26127207
Alignment:
Q  97 caaaaccgctactttttcaaacttaaagggtgaatagtgcgattaagcc 145  Q
    ||||| |||||||||| |||||||| ||||||||||||||| |||||||    
T  26127159 caaaatcgctacttttgcaaacttagagggtgaatagtgcgtttaagcc 26127207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 30155337 - 30155381
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||||||||||||||||||||||| |||| ||| |||||||    
T  30155337 ggtcaaaagagcatatttccctaaacataggggatcacttttgcc 30155381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 77
Target Start/End: Complemental strand, 4522066 - 4522023
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgc 77  Q
    ||||||||||||||||||||||||||||  ||||||| ||||||    
T  4522066 ggtcaaaagagcatatttccctaaacatatggggtcacttttgc 4522023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 64
Target Start/End: Complemental strand, 23320474 - 23320443
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggg 64  Q
    ||||||||||||||||||||||||||||||||    
T  23320474 gggtcaaaagagcatatttccctaaacatggg 23320443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 78
Target Start/End: Original strand, 46673240 - 46673283
Alignment:
Q  35 gtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    ||||||||||||||||||||||||||| |||| ||| |||||||    
T  46673240 gtcaaaagagcatatttccctaaacataggggatcacttttgcc 46673283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 26633549 - 26633592
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||||||||||||||||||||| ||  |||||||||||||||    
T  26633549 gggtcaaaagagcatatttccctaaagat--ggggtcatttttgcc 26633592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 3329005 - 3329046
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcattttt 75  Q
    |||||||||||||||||||||||||| | |||||||| ||||    
T  3329005 ggtcaaaagagcatatttccctaaacttagggggtcactttt 3329046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 4775963 - 4775930
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggggg 66  Q
    ||||||||| ||||||||||||||||||||||||    
T  4775963 gggtcaaaatagcatatttccctaaacatggggg 4775930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 62
Target Start/End: Original strand, 9496408 - 9496437
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatg 62  Q
    ||||||||||||||||||||||||||||||    
T  9496408 gggtcaaaagagcatatttccctaaacatg 9496437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 18388891 - 18388924
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggggg 66  Q
    ||||||||||||||||||||||| ||||||||||    
T  18388891 gggtcaaaagagcatatttcccttaacatggggg 18388924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 22416445 - 22416400
Alignment:
Q  34 ggtcaaaagagcatatttccctaaaca-tggggggtcatttttgcc 78  Q
    |||||||||||||||| |||||||||| |||||||||| |||||||    
T  22416445 ggtcaaaagagcatatatccctaaacattggggggtcacttttgcc 22416400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 48860814 - 48860773
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcattttt 75  Q
    |||||||| |||||||||||||||||||  ||||||||||||    
T  48860814 ggtcaaaatagcatatttccctaaacataaggggtcattttt 48860773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 8339132 - 8339176
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||| |||||||||||||||||||  ||||||| |||||||    
T  8339132 ggtcaaaaaagcatatttccctaaacataaggggtcacttttgcc 8339176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 22416496 - 22416460
Alignment:
Q  15 actttttgttaaaataatgggtcaaaagagcatattt 51  Q
    ||||||||| || ||||||||||||||||||||||||    
T  22416496 actttttgtaaagataatgggtcaaaagagcatattt 22416460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 26177209 - 26177257
Alignment:
Q  97 caaaaccgctactttttcaaacttaaagggtgaatagtgcgattaagcc 145  Q
    ||||| |||||||||| |||||||| ||||||||||||||  |||||||    
T  26177209 caaaatcgctacttttgcaaacttagagggtgaatagtgcatttaagcc 26177257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 40836370 - 40836402
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatgggg 65  Q
    ||||||||||| |||||||||||||||||||||    
T  40836370 gggtcaaaagaacatatttccctaaacatgggg 40836402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 21666465 - 21666510
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||    
T  21666465 gggtcaagagagcatatttccctaaacatggggggtcacttttgcc 21666510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 12723453 - 12723497
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||    
T  12723453 ggtcaaaagagcatatttctctaaacatagggggtcatttttgcc 12723497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 17648355 - 17648311
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||||||||||||||||||||||| |||||||| |||||||    
T  17648355 ggtcaaaagagcatatttccctaaacatagggggtcacttttgcc 17648311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 19391579 - 19391623
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||||||||||||||||||||||| |||||||| |||||||    
T  19391579 ggtcaaaagagcatatttccctaaacatagggggtcacttttgcc 19391623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 78
Target Start/End: Original strand, 4519061 - 4519103
Alignment:
Q  36 tcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||||||||||||||||||||| |||||||| |||||||    
T  4519061 tcaaaagagcatatttccctaaacatagggggtcacttttgcc 4519103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 1824718 - 1824686
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatgggg 65  Q
    |||||||||||||||||||||||||||||||||    
T  1824718 gggtcaaaagagcatatttccctaaacatgggg 1824686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 1859163 - 1859131
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatgggg 65  Q
    |||||||||||||||||||||||||||||||||    
T  1859163 gggtcaaaagagcatatttccctaaacatgggg 1859131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 5192463 - 5192507
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||||||||||||||||||||||| || ||||| |||||||    
T  5192463 ggtcaaaagagcatatttccctaaacataggaggtcacttttgcc 5192507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 8802591 - 8802635
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||||||||||||||||||||||| | |||||| |||||||    
T  8802591 ggtcaaaagagcatatttccctaaacatagagggtcacttttgcc 8802635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 30784456 - 30784500
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    ||||||||||||||||||||||||||||  ||||||| |||||||    
T  30784456 ggtcaaaagagcatatttccctaaacatacggggtcacttttgcc 30784500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 78
Target Start/End: Complemental strand, 31268394 - 31268347
Alignment:
Q  31 atgggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    ||||| |||||||||||||||||||||||| |||| |||| |||||||    
T  31268394 atggggcaaaagagcatatttccctaaacacggggagtcacttttgcc 31268347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 77
Target Start/End: Complemental strand, 33895486 - 33895443
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgc 77  Q
    |||||||||||||||||||||||||||| |||| ||| ||||||    
T  33895486 ggtcaaaagagcatatttccctaaacataggggatcacttttgc 33895443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 70
Target Start/End: Complemental strand, 3380307 - 3380274
Alignment:
Q  37 caaaagagcatatttccctaaacatggggggtca 70  Q
    ||||||||||||||| ||||||||||||||||||    
T  3380307 caaaagagcatatttacctaaacatggggggtca 3380274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 65
Target Start/End: Original strand, 7117305 - 7117338
Alignment:
Q  32 tgggtcaaaagagcatatttccctaaacatgggg 65  Q
    ||||||||||||||||||||| ||||||||||||    
T  7117305 tgggtcaaaagagcatatttctctaaacatgggg 7117338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 38630167 - 38630126
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcattttt 75  Q
    |||||||||||||||||||||||||||| ||| |||| ||||    
T  38630167 ggtcaaaagagcatatttccctaaacatagggagtcactttt 38630126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 19924377 - 19924333
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    ||||| ||||| |||||||||||||||| |||||||| |||||||    
T  19924377 ggtcagaagagtatatttccctaaacatagggggtcacttttgcc 19924333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 21929995 - 21930027
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggg 66  Q
    |||||||||||||||||||||||||||| ||||    
T  21929995 ggtcaaaagagcatatttccctaaacatagggg 21930027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 25557066 - 25557111
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||    
T  25557066 gggtcaaaagagcatatttccctaaacatagggggtcacttttgcc 25557111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 31055505 - 31055550
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||    
T  31055505 gggtcaaaagagcatatttccctaaacatagggggtcacttttgcc 31055550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 8645909 - 8645865
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||||||||||||||||||||||| |||||||| |||||||    
T  8645909 ggtcaaaagagcatatttccctaaacattgggggtcaattttgcc 8645865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 10293279 - 10293323
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||    
T  10293279 ggtcaaaagagcatatttcccaaaacatagggggtcatttttgcc 10293323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 16307668 - 16307712
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggggggtcatttttgc 77  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||    
T  16307668 gggtcaaaagagcatatttccctaaacatagggggtcacttttgc 16307712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 8673998 - 8674043
Alignment:
Q  15 actttttgttaaaataatgggtcaaaagagcatatttccctaaaca 60  Q
    ||||||||| || |||| ||||||||||||||||||||||||||||    
T  8673998 actttttgtaaagataaggggtcaaaagagcatatttccctaaaca 8674043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 26639229 - 26639273
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    ||||||||||||||||||||||||||||  ||||||| |||||||    
T  26639229 ggtcaaaagagcatatttccctaaacatatggggtcacttttgcc 26639273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 38408741 - 38408697
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    ||||||||||||||||||| |||||||| |||||||| |||||||    
T  38408741 ggtcaaaagagcatatttctctaaacatagggggtcacttttgcc 38408697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 41663715 - 41663747
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatgggg 65  Q
    |||||||||||||||||||||||||||||||||    
T  41663715 gggtcaaaagagcatatttccctaaacatgggg 41663747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 77
Target Start/End: Original strand, 37961441 - 37961484
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgc 77  Q
    |||||||||||| |||||||||||||||||||| ||| ||||||    
T  37961441 ggtcaaaagagcgtatttccctaaacatgggggatcacttttgc 37961484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 61
Target Start/End: Complemental strand, 7835825 - 7835795
Alignment:
Q  31 atgggtcaaaagagcatatttccctaaacat 61  Q
    |||||||||||||||||||||||||||||||    
T  7835825 atgggtcaaaagagcatatttccctaaacat 7835795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 64
Target Start/End: Original strand, 23040143 - 23040173
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggg 64  Q
    |||||||||||||||||||||||||||||||    
T  23040143 ggtcaaaagagcatatttccctaaacatggg 23040173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 38476661 - 38476703
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggggggtcattttt 75  Q
    |||||||||||||||||||||||||| || |||||||| ||||    
T  38476661 gggtcaaaagagcatatttccctaaatatagggggtcactttt 38476703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 38545421 - 38545467
Alignment:
Q  17 tttttgttaaaataatgggtcaaaagagcatatttccctaaacatgg 63  Q
    ||||||| || |||||||| ||||||||||||| |||||||||||||    
T  38545421 tttttgtaaagataatgggccaaaagagcatatatccctaaacatgg 38545467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 17704775 - 17704808
Alignment:
Q  31 atgggtcaaaagagcatatttccctaaacatggg 64  Q
    ||||||||||||||||||||| ||||||||||||    
T  17704775 atgggtcaaaagagcatattttcctaaacatggg 17704808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 62
Target Start/End: Original strand, 17825688 - 17825717
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatg 62  Q
    ||||||||||||||||||||||||||||||    
T  17825688 gggtcaaaagagcatatttccctaaacatg 17825717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 18739878 - 18739829
Alignment:
Q  15 actttttgttaaa-ataatgggtcaaaagagcatatttccctaaacatgg 63  Q
    |||||||| |||| |||| ||| |||||||||||||||||||||||||||    
T  18739878 actttttgataaagataaagggccaaaagagcatatttccctaaacatgg 18739829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 62
Target Start/End: Complemental strand, 20653933 - 20653904
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatg 62  Q
    ||||||||||||||||||||||||||||||    
T  20653933 gggtcaaaagagcatatttccctaaacatg 20653904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 31648168 - 31648123
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    ||||||||| |||||||||||||||||||  ||||||| |||||||    
T  31648168 gggtcaaaaaagcatatttccctaaacataaggggtcacttttgcc 31648123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 35302106 - 35302139
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggggg 66  Q
    |||||||||||||||||||||||||| |||||||    
T  35302106 gggtcaaaagagcatatttccctaaatatggggg 35302139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 245706 - 245674
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggg 66  Q
    |||||||||||||||||||||||||||| ||||    
T  245706 ggtcaaaagagcatatttccctaaacatagggg 245674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 10379395 - 10379351
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggggggtcatttttgc 77  Q
    ||||||||||||||||||| ||||||||| || ||||| ||||||    
T  10379395 gggtcaaaagagcatattttcctaaacataggaggtcacttttgc 10379351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 16901189 - 16901221
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggg 66  Q
    |||||||||||||||||||||||||||| ||||    
T  16901189 ggtcaaaagagcatatttccctaaacatagggg 16901221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 18695115 - 18695083
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggg 66  Q
    |||||||||||||||||||||||||||| ||||    
T  18695115 ggtcaaaagagcatatttccctaaacatagggg 18695083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 23040231 - 23040263
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatgggg 65  Q
    |||||||||||||||||||||||||| ||||||    
T  23040231 gggtcaaaagagcatatttccctaaatatgggg 23040263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 23765582 - 23765614
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggg 66  Q
    |||||||||||||||||||||||||||| ||||    
T  23765582 ggtcaaaagagcatatttccctaaacatagggg 23765614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 23815430 - 23815462
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggg 66  Q
    |||||||||||||||||||||||||||| ||||    
T  23815430 ggtcaaaagagcatatttccctaaacatagggg 23815462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 36641255 - 36641211
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    ||||||||||||||||||| |||||||| |||| ||| |||||||    
T  36641255 ggtcaaaagagcatatttctctaaacataggggctcacttttgcc 36641211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0607 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0607
Description:

Target: scaffold0607; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 2241 - 2285
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||||||||||||||||||||||| |||||||| |||||||    
T  2241 ggtcaaaagagcatatttccctaaacatagggggtcacttttgcc 2285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 5841 - 5885
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||||||||||||||||||||||| |||||||| |||||||    
T  5841 ggtcaaaagagcatatttccctaaacatagggggtcacttttgcc 5885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 2331125 - 2331081
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||||||||||||||||||||||| |||||||| |||||||    
T  2331125 ggtcaaaagagcatatttccctaaacatagggggtcacttttgcc 2331081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 20636731 - 20636687
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||||||||||||||||||||||| |||||||| |||||||    
T  20636731 ggtcaaaagagcatatttccctaaacatagggggtcacttttgcc 20636687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 20638603 - 20638559
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||||||||||||||||||||||| |||||||| |||||||    
T  20638603 ggtcaaaagagcatatttccctaaacatagggggtcacttttgcc 20638559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 21224544 - 21224588
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||||||||||||||||||||||| |||||||| |||||||    
T  21224544 ggtcaaaagagcatatttccctaaacatagggggtcacttttgcc 21224588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 27869387 - 27869431
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||||||||||||||||||||||| |||||||| |||||||    
T  27869387 ggtcaaaagagcatatttccctaaacatagggggtcacttttgcc 27869431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 35337714 - 35337758
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||||||||||||||||||||||| |||||||| |||||||    
T  35337714 ggtcaaaagagcatatttccctaaacatagggggtcacttttgcc 35337758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 42271444 - 42271400
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||||||||||||||||||||||| |||||||| |||||||    
T  42271444 ggtcaaaagagcatatttccctaaacatagggggtcacttttgcc 42271400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 11843368 - 11843413
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    ||||||||||||||||||||||||||||| || ||||| |||||||    
T  11843368 gggtcaaaagagcatatttccctaaacataggaggtcacttttgcc 11843413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 39182047 - 39182005
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    ||||||||||||||||||||||||||||  |||||||||||||||    
T  39182047 ggtcaaaagagcatatttccctaaacat--ggggtcatttttgcc 39182005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 8526908 - 8526864
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    ||||||| |||||||||| ||||||||| ||||||||||||||||    
T  8526908 ggtcaaatgagcatattttcctaaacatagggggtcatttttgcc 8526864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 19195405 - 19195449
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||||||| ||||||||||||||| |||||||| |||||||    
T  19195405 ggtcaaaagagcgtatttccctaaacatagggggtcacttttgcc 19195449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 24597707 - 24597751
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||||||||||||||||||||||| |||||| | |||||||    
T  24597707 ggtcaaaagagcatatttccctaaacatagggggttacttttgcc 24597751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 68
Target Start/End: Original strand, 10023975 - 10024010
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggggggt 68  Q
    ||||||||||||||||||||||||||||| ||||||    
T  10023975 gggtcaaaagagcatatttccctaaacatagggggt 10024010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 77
Target Start/End: Complemental strand, 10655438 - 10655399
Alignment:
Q  38 aaaagagcatatttccctaaacatggggggtcatttttgc 77  Q
    |||||||||||||||||||||||| |||| ||||||||||    
T  10655438 aaaagagcatatttccctaaacataggggatcatttttgc 10655399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 14196968 - 14197011
Alignment:
Q  17 tttttgttaaaataatgggtcaaaagagcatatttccctaaaca 60  Q
    ||||||| || |||| ||||||||||||||||||||||||||||    
T  14196968 tttttgtaaagataaagggtcaaaagagcatatttccctaaaca 14197011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 6650672 - 6650622
Alignment:
Q  15 actttttgttaaaataatgggtcaaaagagcatatttccctaaacatgggg 65  Q
    ||||||||  || |||| |||||||||||||||||||||||||| ||||||    
T  6650672 actttttgagaagataaggggtcaaaagagcatatttccctaaatatgggg 6650622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 25002820 - 25002777
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    ||||||||||||||| |||||||||||||  |||||||||||||||    
T  25002820 gggtcaaaagagcatgtttccctaaacat--ggggtcatttttgcc 25002777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 62
Target Start/End: Original strand, 6798105 - 6798134
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatg 62  Q
    ||||||||||||||||||||||||||||||    
T  6798105 gggtcaaaagagcatatttccctaaacatg 6798134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 62
Target Start/End: Complemental strand, 15681710 - 15681681
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatg 62  Q
    ||||||||||||||||||||||||||||||    
T  15681710 gggtcaaaagagcatatttccctaaacatg 15681681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 18754457 - 18754502
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    ||||||||||||||||||||||||||||| | || ||| |||||||    
T  18754457 gggtcaaaagagcatatttccctaaacatagaggatcacttttgcc 18754502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 21225738 - 21225783
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    ||||||||||||||||||||||||||||| | |||||  |||||||    
T  21225738 gggtcaaaagagcatatttccctaaacatagagggtcgcttttgcc 21225783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 26385374 - 26385329
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    ||||||||| ||||||||||||||||||||  |||||| |||||||    
T  26385374 gggtcaaaatagcatatttccctaaacatgatgggtcacttttgcc 26385329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 31494023 - 31493990
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggggg 66  Q
    ||||||||||||||||||||||||||||| ||||    
T  31494023 gggtcaaaagagcatatttccctaaacatagggg 31493990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 48176153 - 48176198
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    ||||||||||||||||||||||||||||| ||| || | |||||||    
T  48176153 gggtcaaaagagcatatttccctaaacatagggagttacttttgcc 48176198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 3562625 - 3562657
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggg 66  Q
    |||||||||||||||||||||||||||| ||||    
T  3562625 ggtcaaaagagcatatttccctaaacatagggg 3562657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 24464688 - 24464656
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatgggg 65  Q
    ||||||||||| |||||||||||||||||||||    
T  24464688 gggtcaaaagaacatatttccctaaacatgggg 24464656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 36746695 - 36746739
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||||||||||||||||||||||| | |||| | |||||||    
T  36746695 ggtcaaaagagcatatttccctaaacatagtgggttacttttgcc 36746739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 62
Target Start/End: Original strand, 44078063 - 44078091
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatg 62  Q
    |||||||||||||||||||||||||||||    
T  44078063 ggtcaaaagagcatatttccctaaacatg 44078091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 78
Target Start/End: Complemental strand, 61925 - 61882
Alignment:
Q  35 gtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    ||||||||||||||||||||||||||| |||||||| |||||||    
T  61925 gtcaaaagagcatatttccctaaacatagggggtcacttttgcc 61882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 19396 - 19363
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggggg 66  Q
    ||||||||||||||||||||||||||||| ||||    
T  19396 gggtcaaaagagcatatttccctaaacatagggg 19363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 455043 - 455000
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggggggtcatttttg 76  Q
    |||| ||||||||||||||||||||||||||||||||| |||||    
T  455043 gggttaaaagagcatatttccctaaacatggggggtcacttttg 455000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1202 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1202
Description:

Target: scaffold1202; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 135
Target Start/End: Original strand, 1965 - 2067
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggggggtcatttttgccnnnnnnnnaataagggatcaaaaccgctactttttcaaacttaaagggtgaata 132  Q
    ||||||||| ||||||||||||||||||| |||||||| |||||||         | |||||||||||| ||| || |||| ||||||| |||||||| |    
T  1965 gggtcaaaatagcatatttccctaaacatagggggtcacttttgccattttttttaaaagggatcaaaatcgcaacattttgaaacttagagggtgaaaa 2064  T
Q  133 gtg 135  Q
    |||    
T  2065 gtg 2067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 25155 - 25197
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggggggtcattttt 75  Q
    ||||||||||||||||||||||||||||| |||||||| ||||    
T  25155 gggtcaaaagagcatatttccctaaacatagggggtcactttt 25197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 3152 - 3196
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggggtcatttttgcc 78  Q
    |||||||||||||||||||||||||||| || ||||| |||||||    
T  3152 ggtcaaaagagcatatttccctaaacataggaggtcacttttgcc 3196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0267 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 3759 - 3791
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatgggg 65  Q
    |||||||||||||||||||||||||||||||||    
T  3759 gggtcaaaagagcatatttccctaaacatgggg 3791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 62
Target Start/End: Complemental strand, 10036 - 10005
Alignment:
Q  31 atgggtcaaaagagcatatttccctaaacatg 62  Q
    ||||||||||||||||||||||||||||||||    
T  10036 atgggtcaaaagagcatatttccctaaacatg 10005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 96 - 147
Target Start/End: Original strand, 81016 - 81067
Alignment:
Q  96 tcaaaaccgctactttttcaaacttaaagggtgaatagtgcgattaagccta 147  Q
    |||||| |||||||||| ||||||||  |||||||||||||| |||||||||    
T  81016 tcaaaatcgctacttttgcaaacttagggggtgaatagtgcgtttaagccta 81067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 54532 - 54487
Alignment:
Q  15 actttttgttaaaataatgggtcaaaagagcatatttccctaaaca 60  Q
    ||||||||| || |||| ||| ||||||||||||||||||||||||    
T  54532 actttttgtaaagataaggggccaaaagagcatatttccctaaaca 54487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 49772 - 49735
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggggggtca 70  Q
    |||||||||||||||||||||| |||||| ||||||||    
T  49772 gggtcaaaagagcatatttcccgaaacatagggggtca 49735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 62311 - 62274
Alignment:
Q  33 gggtcaaaagagcatatttccctaaacatggggggtca 70  Q
    |||||||||||||||||||||| |||||| ||||||||    
T  62311 gggtcaaaagagcatatttcccgaaacatagggggtca 62274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 205098 - 205049
Alignment:
Q  15 actttttgttaaa-ataatgggtcaaaagagcatatttccctaaacatgg 63  Q
    |||||||| |||| |||| ||| |||||||||||||||||||||||||||    
T  205098 actttttggtaaagataaggggccaaaagagcatatttccctaaacatgg 205049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 64
Target Start/End: Original strand, 35259 - 35295
Alignment:
Q  28 ataatgggtcaaaagagcatatttccctaaacatggg 64  Q
    |||| |||||||||||| |||||||||||||||||||    
T  35259 ataaggggtcaaaagagtatatttccctaaacatggg 35295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 142139 - 142171
Alignment:
Q  34 ggtcaaaagagcatatttccctaaacatggggg 66  Q
    |||||||||||||||||||||||||||| ||||    
T  142139 ggtcaaaagagcatatttccctaaacatagggg 142171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University