View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14248_high_4 (Length: 388)
Name: NF14248_high_4
Description: NF14248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14248_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 46 - 373
Target Start/End: Original strand, 27427680 - 27428023
Alignment:
| Q |
46 |
aatttagaagagttggcatcatatcctggtagctcaaca---------------tattattaacaca-ctttatgaatatgtatatgtatagatgttttt |
129 |
Q |
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| T |
27427680 |
aatttagaagagttggcatcatatcctggtagctcaacaataatatgcatgtaatttttttaacacaactttatgaatatgtatctgtatagatgttttt |
27427779 |
T |
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| Q |
130 |
gtagtt-gttaattgaagtttacaatagcttgcactctttagatcagggtcttagatattatgtcgttctttttattatttttcagtaatataaagtaag |
228 |
Q |
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| T |
27427780 |
gtagtttgttaattgaagttta--atagcttgcactttttagatcagggtcttagatat---gtcgttctttttattatttttcagtaatataaagtaag |
27427874 |
T |
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| Q |
229 |
ttgatatccataataaatcatcaaattgcattatcttctaattaaattgat----tatcaatgtatactaacataacaatctatttaatattgatataac |
324 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
27427875 |
ttgatatccataaaaaatcatcaaattgcattatcttctaattaaattgatatattatcaatgtatactaacataacattctatttaatattgatataac |
27427974 |
T |
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| Q |
325 |
gtaaggtttacttgaaaaatatattaaaaaagtccaaattcctctcttg |
373 |
Q |
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| T |
27427975 |
gtaaggtttacttgaaaaatatattaaaaaagtccaaattcctctcttg |
27428023 |
T |
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